Visualization of omics data for systems biology N Gehlenborg, SI O'Donoghue, NS Baliga, A Goesmann, MA Hibbs, ... Nature methods 7, S56-S68, 2010 | 727 | 2010 |
Whole‐genome sequencing identifies EN1 as a determinant of bone density and fracture HF Zheng, V Forgetta, YH Hsu, K Estrada, A Rosello‐Diez, PJ Leo, ... Nature 526 (7571), 112-117, 2015 | 537 | 2015 |
Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma GR Howell, DG Macalinao, GL Sousa, M Walden, I Soto, SC Kneeland, ... The Journal of clinical investigation 121 (4), 1429, 2011 | 461 | 2011 |
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale A Baryshnikova, M Costanzo, Y Kim, H Ding, J Koh, K Toufighi, JY Youn, ... Nature methods 7 (12), 1017-1024, 2010 | 409 | 2010 |
Exploring the functional landscape of gene expression: directed search of large microarray compendia MA Hibbs, DC Hess, CL Myers, C Huttenhower, K Li, OG Troyanskaya Bioinformatics 23 (20), 2692-2699, 2007 | 302 | 2007 |
Discovery of biological networks from diverse functional genomic data CL Myers, D Robson, A Wible, MA Hibbs, C Chiriac, CL Theesfeld, ... Genome biology 6 (13), R114, 2005 | 261 | 2005 |
Finding function: evaluation methods for functional genomic data CL Myers, DR Barrett, MA Hibbs, C Huttenhower, OG Troyanskaya BMC genomics 7 (1), 187, 2006 | 259 | 2006 |
Exploring the human genome with functional maps C Huttenhower, EM Haley, MA Hibbs, V Dumeaux, DR Barrett, HA Coller, ... Genome research 19 (6), 1093-1106, 2009 | 236 | 2009 |
Genome‐Wide Analysis of N1ICD/RBPJ Targets In Vivo Reveals Direct Transcriptional Regulation of Wnt, SHH, and Hippo Pathway Effectors by Notch1 Y Li, MA Hibbs, AL Gard, NA Shylo, K Yun Stem Cells 30 (4), 741-752, 2012 | 183 | 2012 |
Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis DC Hess, CL Myers, C Huttenhower, MA Hibbs, AP Hayes, J Paw, ... PLoS Genet 5 (3), e1000407-e1000407, 2009 | 183 | 2009 |
Phenotypic Dissection of Bone Mineral Density Reveals Skeletal Site Specificity and Facilitates the Identification of Novel Loci in the Genetic Regulation of Bone Mass Attainment JP Kemp, C Medina-Gomez, K Estrada, B St Pourcain, DHM Heppe, ... PLoS genetics 10 (6), e1004423, 2014 | 154 | 2014 |
Tissue-specific functional networks for prioritizing phenotype and disease genes Y Guan, D Gorenshteyn, M Burmeister, AK Wong, JC Schimenti, ... PLoS computational biology 8 (9), e1002694, 2012 | 145 | 2012 |
Tools and applications for large-scale display walls G Wallace, OJ Anshus, P Bi, H Chen, Y Chen, D Clark, P Cook, ... Computer Graphics and Applications, IEEE 25 (4), 24-33, 2005 | 105 | 2005 |
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods C Huttenhower, A Flamholz, J Landis, S Sahi, C Myers, K Olszewski, ... Bmc Bioinformatics 8 (1), 250, 2007 | 97 | 2007 |
RNA-Seq Alignment to Individualized Genomes Improves Transcript Abundance Estimates in Multiparent Populations SC Munger, N Raghupathy, K Choi, AK Simons, DM Gatti, DA Hinerfeld, ... Genetics 198 (1), 59-73, 2014 | 89 | 2014 |
Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage M Walker, T Billings, CL Baker, N Powers, H Tian, RL Saxl, K Choi, ... Epigenetics & chromatin 8 (1), 1-13, 2015 | 86 | 2015 |
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool R Sealfon, M Hibbs, C Huttenhower, C Myers, O Troyanskaya BMC bioinformatics 7 (1), 443, 2006 | 86 | 2006 |
Canonical A-to-I and C-to-U RNA editing is enriched at 3′ UTRs and microRNA target sites in multiple mouse tissues T Gu, FW Buaas, AK Simons, CL Ackert-Bicknell, RE Braun, MA Hibbs PloS one 7 (3), e33720, 2012 | 82 | 2012 |
Visualization methods for statistical analysis of microarray clusters MA Hibbs, NC Dirksen, K Li, OG Troyanskaya BMC bioinformatics 6 (1), 115, 2005 | 79 | 2005 |
Functional genomics complements quantitative genetics in identifying disease-gene associations Y Guan, CL Ackert-Bicknell, B Kell, OG Troyanskaya, MA Hibbs PLoS computational biology 6 (11), e1000991, 2010 | 69 | 2010 |