Establishment of expanded and streamlined pipeline of PITCh knock-in–a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh c K Nakamae, Y Nishimura, M Takenaga, S Nakade, N Sakamoto, H Ide, ... Bioengineered 8 (3), 302-308, 2017 | 30 | 2017 |
Biased genome editing using the local accumulation of DSB repair molecules system S Nakade, K Mochida, A Kunii, K Nakamae, T Aida, K Tanaka, ... Nature Communications 9 (1), 3270, 2018 | 28 | 2018 |
Genome editing and bioinformatics K Nakamae, H Bono Gene and Genome Editing 3, 100018, 2022 | 5 | 2022 |
DANGER analysis: risk-averse on/off-target assessment for CRISPR editing without a reference genome K Nakamae, H Bono Bioinformatics Advances 3 (1), vbad114, 2023 | 1 | 2023 |
Detailed profiling with MaChIAto reveals various genomic and epigenomic features affecting the efficacy of knock-out, short homology-based knock-in and Prime Editing K Nakamae, M Takenaga, S Nakade, A Awazu, N Sakamoto, T Yamamoto, ... bioRxiv, 2022.06. 27.496697, 2022 | 1 | 2022 |
Machine learning of transcriptome data treated with DNA base editor K Nakamae, T Kakuzaki, K Yamamoto BioHackrXiv, 2023 | | 2023 |
Frame Editors for Precise, Template-Free Frameshifting S Nakade, K Nakamae, TC Tang, D Yu, T Sakuma, T Yamamoto, TK Lu bioRxiv, 2022.12. 05.518807, 2022 | | 2022 |