| Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads R Kajitani, K Toshimoto, H Noguchi, A Toyoda, Y Ogura, M Okuno, ... Genome research 24 (8), 1384-1395, 2014 | 1086 | 2014 |
| Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes K Kurokawa, T Itoh, T Kuwahara, K Oshima, H Toh, A Toyoda, H Takami, ... Dna Research 14 (4), 169-181, 2007 | 1064 | 2007 |
| Bile acid is a host factor that regulates the composition of the cecal microbiota in rats KBMS Islam, S Fukiya, M Hagio, N Fujii, S Ishizuka, T Ooka, Y Ogura, ... Gastroenterology 141 (5), 1773-1781, 2011 | 964 | 2011 |
| Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer S Yachida, S Mizutani, H Shiroma, S Shiba, T Nakajima, T Sakamoto, ... Nature medicine 25 (6), 968-976, 2019 | 883 | 2019 |
| Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli Y Ogura, T Ooka, A Iguchi, H Toh, M Asadulghani, K Oshima, T Kodama, ... Proceedings of the National Academy of Sciences 106 (42), 17939-17944, 2009 | 423 | 2009 |
| Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69 A Iguchi, NR Thomson, Y Ogura, D Saunders, T Ooka, IR Henderson, ... Journal of bacteriology 191 (1), 347-354, 2009 | 373 | 2009 |
| Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. T Sawabe, Y Ogura, Y Matsumura, G Feng, AKMR Amin, S Mino, ... Frontiers in microbiology 4, 414, 2013 | 313 | 2013 |
| The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants MD Asadulghani, Y Ogura, T Ooka, T Itoh, A Sawaguchi, A Iguchi, ... PLoS pathogens 5 (5), e1000408, 2009 | 250 | 2009 |
| The genomic basis of parasitism in the Strongyloides clade of nematodes VL Hunt, IJ Tsai, A Coghlan, AJ Reid, N Holroyd, BJ Foth, A Tracey, ... Nature genetics 48 (3), 299-307, 2016 | 240 | 2016 |
| Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning M Ohnishi, J Terajima, K Kurokawa, K Nakayama, T Murata, K Tamura, ... Proceedings of the National Academy of Sciences 99 (26), 17043-17048, 2002 | 231 | 2002 |
| Is bile acid a determinant of the gut microbiota on a high-fat diet? A Yokota, S Fukiya, KBMS Islam, T Ooka, Y Ogura, T Hayashi, M Hagio, ... Gut microbes 3 (5), 455-459, 2012 | 227 | 2012 |
| Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen A Iguchi, Y Nagaya, E Pradel, T Ooka, Y Ogura, K Katsura, K Kurokawa, ... Genome biology and evolution 6 (8), 2096-2110, 2014 | 202 | 2014 |
| Clinical significance of Escherichia albertii T Ooka, K Seto, K Kawano, H Kobayashi, Y Etoh, S Ichihara, A Kaneko, ... Emerging infectious diseases 18 (3), 488, 2012 | 196 | 2012 |
| A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster A Iguchi, S Iyoda, T Kikuchi, Y Ogura, K Katsura, M Ohnishi, T Hayashi, ... DNA research 22 (1), 101-107, 2015 | 190 | 2015 |
| The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome … K Nakayama, A Yamashita, K Kurokawa, T Morimoto, M Ogawa, ... DNA research 15 (4), 185-199, 2008 | 187 | 2008 |
| ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through … N Nakanishi, H Abe, Y Ogura, T Hayashi, K Tashiro, S Kuhara, ... Molecular microbiology 61 (1), 194-205, 2006 | 178 | 2006 |
| Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria S Yoshizawa, Y Kumagai, H Kim, Y Ogura, T Hayashi, W Iwasaki, ... Proceedings of the National Academy of Sciences 111 (18), 6732-6737, 2014 | 163 | 2014 |
| A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis SR Leopold, V Magrini, NJ Holt, N Shaikh, ER Mardis, J Cagno, Y Ogura, ... Proceedings of the National Academy of Sciences 106 (21), 8713-8718, 2009 | 143 | 2009 |
| Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia colistrains of O157 and non-O157 serotypes Y Ogura, T Ooka, Asadulghani, J Terajima, JP Nougayrède, K Kurokawa, ... Genome biology 8, 1-20, 2007 | 134 | 2007 |
| Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult K Oshima, H Toh, Y Ogura, H Sasamoto, H Morita, SH Park, T Ooka, ... DNA research 15 (6), 375-386, 2008 | 127 | 2008 |
