Akira Funahashi - Google Scholar

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共著者

Hiroaki KitanoThe Systems Biology Institute, Director / Sony Computer Science Laboratories, Inc., President and CEO / Okinawa Institute of Science and Technology, Professor確認したメールアドレス: sbi.jp
Noriko F Hiroi, 広井賀子Professor, Tokyo University of Science/Sanyo-Onoda City University, Yamaguchi確認したメールアドレス: rs.socu.ac.jp
Hideharu AmanoKeio University確認したメールアドレス: am.ics.keio.ac.jp
Michael HuckaCalifornia Institute of Technology確認したメールアドレス: caltech.edu
Emek DemirOHSU確認したメールアドレス: ohsu.edu
Falk SchreiberProfessor, University of Konstanz and Monash University確認したメールアドレス: uni-konstanz.de
Huaiyu MiPreventive Medicine, University of Southern California確認したメールアドレス: usc.edu
Bruce E. ShapiroCalifornia State University, Northridge, Retired確認したメールアドレス: csun.edu
Maria SchilstraPrincipal Laboratory Scientist確認したメールアドレス: crick.ac.uk
Viji Mythily DraviamQueen Mary University of London確認したメールアドレス: qmul.ac.uk
Mirit AladjemNCI確認したメールアドレス: mail.nih.gov
Augustin LunaResearch Fellow | Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard確認したメールアドレス: mail.nih.gov
Anatoly SorokinInstitute of Cell Biophysics RAS確認したメールアドレス: icb.psn.ru
Ugur DogrusozProfessor of Computer Engineering, Bilkent University, Ankara, Turkey確認したメールアドレス: cs.bilkent.edu.tr
John DoyleCaltech確認したメールアドレス: caltech.edu
Andreas DrägerJunior Professor for Computational Systems Biology of Infection and Antimicrobial-Resistance確認したメールアドレス: informatik.uni-tuebingen.de
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, Germany確認したメールアドレス: caltech.edu
Hiroaki NishiKeio University確認したメールアドレス: sd.keio.ac.jp
Tobias CzaudernaMonash University確認したメールアドレス: monash.edu
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham Institute確認したメールアドレス: babraham.ac.uk

Akira Funahashi

Associate Professor of Systems Biology, Keio University

確認したメールアドレス: bio.keio.ac.jp - ホームページ

Systems Biology Quantitative Biology Parallel Processing


タイトル引用回数順公開年順タイトル順	引用先引用先	年
A comprehensive pathway map of epidermal growth factor receptor signaling K Oda, Y Matsuoka, A Funahashi, H Kitano Molecular systems biology 1 (1), 2005.0010, 2005	1157	2005
The systems biology graphical notation N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	833	2009
CellDesigner: a process diagram editor for gene-regulatory and biochemical networks A Funahashi, M Morohashi, H Kitano, N Tanimura Biosilico 1 (5), 159-162, 2003	658	2003
Using process diagrams for the graphical representation of biological networks H Kitano, A Funahashi, Y Matsuoka, K Oda Nature biotechnology 23 (8), 961-966, 2005	514	2005
CellDesigner 3.5: a versatile modeling tool for biochemical networks A Funahashi, Y Matsuoka, A Jouraku, M Morohashi, N Kikuchi, H Kitano Proceedings of the IEEE 96 (8), 1254-1265, 2008	462	2008
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems biology 1 (1), 41-53, 2004	277	2004
Recursive diagonal torus: an interconnection network for massively parallel computers Y Yang, A Funahashi, A Jouraku, H Nishi, H Amano, T Sueyoshi IEEE Transactions on Parallel and Distributed Systems 12 (7), 701-715, 2001	99	2001
Software support for SBGN maps: SBGN-ML and LibSBGN MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ... Bioinformatics 28 (15), 2016-2021, 2012	84	2012
Integration of CellDesigner and SABIO-RK A Funahashi, A Jouraku, Y Matsuoka, H Kitano In silico biology 7 (2 Supplement), 81-90, 2007	69	2007
L-turn routing: An adaptive routing in irregular networks M Koibuchi, A Funahashi, A Jouraku, H Amano International Conference on Parallel Processing, 2001., 383-392, 2001	69	2001
Molecular interaction map of a macrophage K Oda, T Kimura, Y Matsuoka, A Funahashi, M Muramatsu, H Kitano AfCS Research Reports 2 (14), 1-12, 2004	65	2004
Detection of temperature difference in neuronal cells R Tanimoto, T Hiraiwa, Y Nakai, Y Shindo, K Oka, N Hiroi, A Funahashi Scientific reports 6, 22071, 2016	59	2016
Introduction to systems biology S Choi Humana press, 2007	51	2007
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1 (1), 8, 2010	49	2010
Modeling and simulation using CellDesigner Y Matsuoka, A Funahashi, S Ghosh, H Kitano Transcription Factor Regulatory Networks, 121-145, 2014	45	2014
CellDesigner: a modeling tool for biochemical networks A Funahashi, Y Matsuoka, A Jouraku, H Kitano, N Kikuchi Proceedings of the 2006 Winter Simulation Conference, 1707-1712, 2006	45	2006
The principles of whole-cell modeling JR Karr, K Takahashi, A Funahashi Current opinion in microbiology 27, 18-24, 2015	42	2015
Hardware-resource Utilization Analysis on an FPGA-Based Biochemical Simulator ReCSiP Y Osana The Institute of Electronics Information and Communication Technical Report …, 2006	41	2006
High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes Y Nakai, M Ozeki, T Hiraiwa, R Tanimoto, A Funahashi, N Hiroi, ... Review of Scientific Instruments 86 (1), 013707, 2015	40	2015
The systems biology simulation core algorithm R Keller, A Dörr, A Tabira, A Funahashi, MJ Ziller, R Adams, N Rodriguez, ... BMC systems biology 7 (1), 55, 2013	32	2013

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