| MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ... Molecular biology and evolution 30 (11), 2531-2540, 2013 | 450 | 2013 |
| MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ... Royal Society open science 2 (7), 150088, 2015 | 377 | 2015 |
| Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ... PloS one 8 (9), e73535, 2013 | 123 | 2013 |
| CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15 (1), 1-15, 2014 | 56 | 2014 |
| MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki Molecular biology and evolution 35 (6), 1553-1555, 2018 | 54 | 2018 |
| RIblast: an ultrafast RNA–RNA interaction prediction system based on a seed-and-extension approach T Fukunaga, M Hamada Bioinformatics 33 (17), 2666-2674, 2017 | 37 | 2017 |
| Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data C Zeng, T Fukunaga, M Hamada BMC genomics 19 (1), 1-14, 2018 | 27 | 2018 |
| GroupTracker: video tracking system for multiple animals under severe occlusion T Fukunaga, S Kubota, S Oda, W Iwasaki Computational biology and chemistry 57, 39-45, 2015 | 25 | 2015 |
| LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data T Fukunaga, J Iwakiri, Y Ono, M Hamada Frontiers in genetics 10, 462, 2019 | 15 | 2019 |
| Rtools: a web server for various secondary structural analyses on single RNA sequences M Hamada, Y Ono, H Kiryu, K Sato, Y Kato, T Fukunaga, R Mori, K Asai Nucleic acids research 44 (W1), W302-W307, 2016 | 10 | 2016 |
| Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia Y Kumagai, S Yoshizawa, Y Nakajima, M Watanabe, T Fukunaga, ... The ISME journal 12 (5), 1329-1343, 2018 | 8 | 2018 |
| Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference T Matsutani, Y Ueno, T Fukunaga, M Hamada Bioinformatics 35 (22), 4543-4552, 2019 | 5 | 2019 |
| Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation S Hosoda, S Nishijima, T Fukunaga, M Hattori, M Hamada Microbiome 8 (1), 1-12, 2020 | 3 | 2020 |
| Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants T Fukunaga, W Iwasaki BMC bioinformatics 18 (1), 1-9, 2017 | 3 | 2017 |
| Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data T Fukunaga, W Iwasaki PloS one 15 (5), e0232106, 2020 | 2 | 2020 |
| Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with tretinoin increases the sunitinib sensitivity to better suppress the RCC progression H Shi, Y Sun, M He, X Yang, M Hamada, T Fukunaga, X Zhang, C Chang Oncogene 39 (3), 530-545, 2020 | 2 | 2020 |
| MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction K Mori, H Ozaki, T Fukunaga 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | | 2020 |
| Mirage: A phylogenetic mixture model to reconstruct gene-content evolutionary history using a realistic evolutionary rate model T Fukunaga, W Iwasaki bioRxiv, 2020 | | 2020 |
| Novel metric for hyperbolic phylogenetic tree embeddings H Matsumoto, T Mimori, T Fukunaga bioRxiv, 2020 | | 2020 |
| Computational approaches for alternative and transient secondary structures of ribonucleic acids T Fukunaga, M Hamada Briefings in functional genomics 18 (3), 182-191, 2019 | | 2019 |
Wataru IwasakiAssociate Professor, Department of Biological Sciences, the University of TokyoVerified email at bs.s.u-tokyo.ac.jp
