フォロー
Shuichi Onami
Shuichi Onami
RIKEN Center for Biosystems Dynamics Research
確認したメール アドレス: riken.jp - ホームページ
タイトル
引用先
引用先
Computer Simulations and Image Processing Reveal Length-Dependent Pulling Force as the Primary Mechanism for C. elegans Male Pronuclear Migration
A Kimura, S Onami
Developmental cell 8 (5), 765-775, 2005
1512005
Improving spinning disk confocal microscopy by preventing pinhole cross-talk for intravital imaging
T Shimozawa, K Yamagata, T Kondo, S Hayashi, A Shitamukai, D Konno, ...
Proceedings of the National Academy of Sciences 110 (9), 3399-3404, 2013
952013
REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology
U Sarkans, W Chiu, L Collinson, MC Darrow, J Ellenberg, D Grunwald, ...
Nature methods 18 (12), 1418-1422, 2021
762021
Local cortical pulling-force repression switches centrosomal centration and posterior displacement in C. elegans
A Kimura, S Onami
J Cell Biol 179 (7), 1347-1354, 2007
692007
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking
S Hamahashi, S Onami, H Kitano
BMC bioinformatics 6 (1), 125, 2005
662005
Bio-calculus: Its concept and molecular interaction
M Nagasaki, S Onami, S Miyano, H Kitano
Genome Informatics 10, 133-143, 1999
641999
A gene network inference method from continuous-value gene expression data of wild-type and mutants
KM Kyoda, S Onami, M Morohashi, H Kitano
Genome Informatics 11, 196-204, 2000
602000
A global view of standards for open image data formats and repositories
JR Swedlow, P Kankaanpää, U Sarkans, W Goscinski, G Galloway, ...
Nature Methods 18 (12), 1440-1446, 2021
572021
QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
G Nelson, U Boehm, S Bagley, P Bajcsy, J Bischof, CM Brown, A Dauphin, ...
Journal of microscopy 284 (1), 56-73, 2021
492021
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena
Y Tohsato, KHL Ho, K Kyoda, S Onami
Bioinformatics 32 (22), 3471-3479, 2016
452016
WDDD: worm developmental dynamics database
K Kyoda, E Adachi, E Masuda, Y Nagai, Y Suzuki, T Oguro, M Urai, R Arai, ...
Nucleic acids research 41 (D1), D732-D737, 2012
382012
The sperm TRP-3 channel mediates the onset of a Ca2+ wave in the fertilized C. elegans oocyte
J Takayama, S Onami
Cell reports 15 (3), 625-637, 2016
352016
PHi-C: deciphering Hi-C data into polymer dynamics
S Shinkai, M Nakagawa, T Sugawara, Y Togashi, H Ochiai, R Nakato, ...
NAR Genomics and Bioinformatics 2 (2), lqaa020, 2020
322020
DBRF–MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants
K Kyoda, K Baba, S Onami, H Kitano
Bioinformatics 20 (16), 2662-2675, 2004
282004
Condensed but liquid-like domain organization of active chromatin regions in living human cells
T Nozaki, S Shinkai, S Ide, K Higashi, S Tamura, MA Shimazoe, ...
Science Advances 9 (14), eadf1488, 2023
262023
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ...
bioRxiv, 2023.02. 17.528834, 2023
262023
Towards automatic construction of cell-lineage of C. elegans from Nomarski DIC microscope images
T Yasuda, H Bannai, S Onami, S Miyano, H Kitano
Genome Informatics 10, 144-154, 1999
241999
Biologically constrained optimization based cell membrane segmentation in C. elegans embryos
Y Azuma, S Onami
BMC bioinformatics 18 (1), 307, 2017
222017
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki, S Onami, K Maeshima
Science Advances 8 (22), eabn5626, 2022
202022
3 The DBRF Method for Inferring Network from Large-Scale Steady-State Gene Expression Data
S Onami, KM Kyoda, M Morohashi, H Kitano
Foundations of systems biology, 59, 2001
202001
現在システムで処理を実行できません。しばらくしてからもう一度お試しください。
論文 1–20