| Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans BB Oude Munnink, RS Sikkema, DF Nieuwenhuijse, RJ Molenaar, ... Science 371 (6525), 172-177, 2021 | 1046 | 2021 |
| Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1-12, 2019 | 704 | 2019 |
| Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands BB Oude Munnink, DF Nieuwenhuijse, M Stein, Á O’Toole, M Haverkate, ... Nature medicine 26 (9), 1405-1410, 2020 | 324 | 2020 |
| COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study RS Sikkema, SD Pas, DF Nieuwenhuijse, Á O'Toole, J Verweij, ... The Lancet Infectious Diseases 20 (11), 1273-1280, 2020 | 288 | 2020 |
| The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology BB Oude Munnink, N Worp, DF Nieuwenhuijse, RS Sikkema, ... Nature medicine 27 (9), 1518-1524, 2021 | 209 | 2021 |
| Monitoring SARS-CoV-2 circulation and diversity through community wastewater sequencing, the Netherlands and Belgium R Izquierdo-Lara, G Elsinga, L Heijnen, BBO Munnink, ... Emerging infectious diseases 27 (5), 1405, 2021 | 176 | 2021 |
| Studies into the mechanism of measles-associated immune suppression during a measles outbreak in the Netherlands BM Laksono, RD de Vries, RJ Verburgh, EG Visser, A de Jong, PLA Fraaij, ... Nature communications 9 (1), 1-10, 2018 | 108 | 2018 |
| Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands L Lu, RS Sikkema, FC Velkers, DF Nieuwenhuijse, EAJ Fischer, PA Meijer, ... Nature communications 12 (1), 1-12, 2021 | 91 | 2021 |
| Metagenomic sequencing for surveillance of food-and waterborne viral diseases DF Nieuwenhuijse, MPG Koopmans Frontiers in Microbiology 8, 230, 2017 | 77 | 2017 |
| Virus metagenomics in farm animals: a systematic review KTT Kwok, DF Nieuwenhuijse, MVT Phan, MPG Koopmans Viruses 12 (1), 107, 2020 | 73 | 2020 |
| Genomic monitoring to understand the emergence and spread of Usutu virus in the Netherlands, 2016–2018 BB Oude Munnink, E Münger, DF Nieuwenhuijse, R Kohl, ... Scientific reports 10 (1), 1-10, 2020 | 49 | 2020 |
| Setting a baseline for global urban virome surveillance in sewage DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ... Scientific Reports 10 (1), 1-13, 2020 | 43 | 2020 |
| The COMPARE data hubs C Amid, N Pakseresht, N Silvester, S Jayathilaka, O Lund, LD Dynovski, ... Database 2019, 2019 | 33 | 2019 |
| Metavirome sequencing to evaluate norovirus diversity in sewage and related bioaccumulated oysters S Strubbia, J Schaeffer, BB Oude Munnink, A Besnard, MVT Phan, ... Frontiers in microbiology 10, 2394, 2019 | 32 | 2019 |
| Induction of cross-clade antibody and T-cell responses by a modified vaccinia virus Ankara–Based influenza A (H5N1) vaccine in a randomized phase 1/2a clinical trial RD de Vries, AF Altenburg, NJ Nieuwkoop, E De Bruin, SE van Trierum, ... The Journal of infectious diseases 218 (4), 614-623, 2018 | 29 | 2018 |
| Why psychiatry is different-challenges and difficulties in managing a nosocomial outbreak of coronavirus disease (COVID-19) in hospital care JJE Rovers, LS Van de Linde, N Kenters, EM Bisseling, ... Antimicrobial Resistance & Infection Control 9 (1), 1-8, 2020 | 26 | 2020 |
| Validating whole genome nanopore sequencing, using Usutu virus as an example BBO Munnink, DF Nieuwenhuijse, RS Sikkema, M Koopmans JoVE (Journal of Visualized Experiments), e60906, 2020 | 14 | 2020 |
| Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View E Saccenti, D Nieuwenhuijse, JJ Koehorst, VAP Martins dos Santos, ... PloS one 10 (9), e0137908, 2015 | 11 | 2015 |
| Towards reliable whole genome sequencing for outbreak preparedness and response DF Nieuwenhuijse, A van der Linden, RHG Kohl, RS Sikkema, ... BMC genomics 23 (1), 1-9, 2022 | 8 | 2022 |
| Diminished amplification of SARS-CoV-2 ORF1ab in a commercial dual-target qRT-PCR diagnostic assay S Popping, R Molenkamp, JD Weigel, PGNJ Mutsaers, JC Voermans, ... Journal of virological methods 300, 114397, 2022 | 7 | 2022 |
