SATO, Yukuto Ph. D.
SATO, Yukuto Ph. D.
Lecturer(full-time); Center for Strategic Research Project, University of the Ryukyus
Verified email at
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MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ...
Royal Society open science 2 (7), 150088, 2015
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ...
Nature communications 6, 8018, 2015
Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
S Yamamoto, R Masuda, Y Sato, T Sado, H Araki, M Kondoh, T Minamoto, ...
Scientific reports 7 (1), 1-12, 2017
Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families
M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ...
PloS one 8 (9), e73535, 2013
Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling
J Inoue, Y Sato, R Sinclair, K Tsukamoto, M Nishida
Proceedings of the National Academy of Sciences 112 (48), 14918-14923, 2015
iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing
Y Yamaguchi-Kabata, N Nariai, Y Kawai, Y Sato, K Kojima, M Tateno, ...
Human genome variation 2 (1), 1-4, 2015
Environmental DNA enables detection of terrestrial mammals from forest pond water
M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ...
Molecular Ecology Resources 17 (6), e63-e75, 2017
Teleost fish with specific genome duplication as unique models of vertebrate evolution
Y Sato, M Nishida
Environmental Biology of Fishes 88 (2), 169-188, 2010
Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication
Y Sato, Y Hashiguchi, M Nishida
BMC evolutionary biology 9 (1), 127, 2009
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data
N Nariai, K Kojima, S Saito, T Mimori, Y Sato, Y Kawai, ...
BMC genomics 16 (S2), S7, 2015
MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding
Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki
Molecular biology and evolution 35 (6), 1553-1555, 2018
TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
N Nariai, K Kojima, T Mimori, Y Sato, Y Kawai, Y Yamaguchi-Kabata, ...
BMC genomics 15 (S10), S5, 2014
Inter-individual differences in the oral bacteriome are greater than intra-day fluctuations in individuals
Y Sato, J Yamagishi, R Yamashita, N Shinozaki, B Ye, T Yamada, ...
PloS one 10 (6), e0131607, 2015
iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data
T Mimori, N Nariai, K Kojima, M Takahashi, A Ono, Y Sato, ...
BMC systems biology 7 (6), 1-8, 2013
Comparing local‐and regional‐scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods
H Nakagawa, S Yamamoto, Y Sato, T Sado, T Minamoto, M Miya
Freshwater Biology 63 (6), 569-580, 2018
Post-duplication charge evolution of phosphoglucose isomerases in teleost fishes through weak selection on many amino acid sites
Y Sato, M Nishida
BMC evolutionary biology 7 (1), 204, 2007
A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads
K Kojima, N Nariai, T Mimori, M Takahashi, Y Yamaguchi-Kabata, Y Sato, ...
Bioinformatics 29 (22), 2835-2843, 2013
Comparison of boiling and robotics automation method in DNA extraction for metagenomic sequencing of human oral microbes
J Yamagishi, Y Sato, N Shinozaki, B Ye, A Tsuboi, M Nagasaki, ...
PLoS One 11 (4), e0154389, 2016
Transfer RNA gene arrangement and codon usage in vertebrate mitochondrial genomes: a new insight into gene order conservation
TP Satoh, Y Sato, N Masuyama, M Miya, M Nishida
BMC genomics 11 (1), 479, 2010
Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway
Y Sato, Y Hashiguchi, M Nishida
BMC systems biology 3 (1), 23, 2009
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