hong yu

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Weisong LiuUniversity of Massachusetts LowellVerified email at uml.edu
Abhyuday N JagannathaCICS, UMass AmherstVerified email at cs.umass.edu
Tsendsuren MunkhdalaiResearch Scientist, GoogleVerified email at google.com
andrey rzhetskyProfessor, University of ChicagoVerified email at uchicago.edu
John LalorAssistant Professor, University of Notre DameVerified email at nd.edu
Shashank AgarwalUniversity of Wisconsin-MilwaukeeVerified email at dataxu.com
Fei LiWuhan UniversityVerified email at whu.edu.cn
Yong-gang CaoAmazonVerified email at amazon.com
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Balaji Polepalli RameshVP Data Science, NLP/Machine Learning Scientist at BlackRockVerified email at umassmed.edu
Michael KrauthammerUniversity of ZurichVerified email at uzh.ch
James CiminoUniversity of Alabama at BirminghamVerified email at uab.edu
George HripcsakColumbia UniversityVerified email at columbia.edu
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Lamont AntieauUniversity of KentuckyVerified email at antieau.org
Pablo DuboueIndependent ResearcherVerified email at famaf.unc.edu.ar
Dan JurafskyProfessor of Linguistics and Computer Science, Stanford UniversityVerified email at stanford.edu
Alok KapoorUMass Medical School (primary) , Boston University School of Medicine (adjunct)Verified email at umassmemorial.org
Pierre ZweigenbaumSenior Researcher, LISN, CNRS, Université Paris-Saclay, Orsay, France (formery LIMSI)Verified email at lisn.fr
Carl SableCooper UnionVerified email at cooper.edu

hong yu

Professor, Director, CHORDS; Professor, Miner school of computer & information sciences, UMass

Verified email at uml.edu - Homepage

biomedical informatics natural language processing


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Towards answering opinion questions: Separating facts from opinions and identifying the polarity of opinion sentences H Yu, V Hatzivassiloglou Proceedings of the 2003 conference on Empirical methods in natural language …, 2003	1670	2003
Meta networks T Munkhdalai, H Yu International conference on machine learning, 2554-2563, 2017	1301	2017
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles C Friedman, P Kra, H Yu, M Krauthammer, A Rzhetsky ISMB (supplement of bioinformatics), 74-82, 2001	722	2001
Frontiers of biomedical text mining: current progress P Zweigenbaum, D Demner-Fushman, H Yu, KB Cohen Briefings in bioinformatics 8 (5), 358-375, 2007	417	2007
Bidirectional Recurrent Neural Networks for Medical Event Detection in Electronic Health Records AN Jagannatha, H Yu	401*	2016
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data A Rzhetsky, I Iossifov, T Koike, M Krauthammer, P Kra, M Morris, H Yu, ... Journal of biomedical informatics 37 (1), 43-53, 2004	357	2004
AskHERMES: An online question answering system for complex clinical questions YG Cao, F Liu, P Simpson, L Antieau, A Bennett, JJ Cimino, J Ely, H Yu Journal of biomedical informatics 44 (2), 277-288, 2011	297	2011
Automatic extraction of opinion propositions and their holders S Bethard, H Yu, A Thornton, V Hatzivassiloglou, D Jurafsky 2004 AAAI spring symposium on exploring attitude and affect in text 2224, 2004	288	2004
Structured prediction models for RNN based sequence labeling in medical text AN Jagannatha, H Yu EMNLP, 2016	277*	2016
Mapping abbreviations to full forms in biomedical articles H Yu, G Hripcsak, C Friedman Journal of the American Medical Informatics Association 9 (3), 262-272, 2002	206	2002
Fine-tuning bidirectional encoder representations from transformers (BERT)–based models on large-scale electronic health record notes: an empirical study F Li, Y Jin, W Liu, BPS Rawat, P Cai, H Yu JMIR medical informatics 7 (3), e14830, 2019	175	2019
ICD coding from clinical text using multi-filter residual convolutional neural network F Li, H Yu proceedings of the AAAI conference on artificial intelligence 34 (05), 8180-8187, 2020	171	2020
Overview of the first natural language processing challenge for extracting medication, indication, and adverse drug events from electronic health record notes (MADE 1.0) A Jagannatha, F Liu, W Liu, H Yu Drug safety 42, 99-111, 2019	168	2019
Neural semantic encoders T Munkhdalai, H Yu Proceedings of the conference. Association for Computational Linguistics …, 2017	153	2017
Extracting synonymous gene and protein terms from biological literature H Yu, E Agichtein	142	2003
Beyond information retrieval—medical question answering M Lee, J Cimino, HR Zhu, C Sable, V Shanker, J Ely, H Yu AMIA annual symposium proceedings 2006, 469, 2006	137	2006
Self-monitoring service system with reporting of asset changes by time and category D Kemp, D Atallah, C Ng, H Yu US Patent App. 10/179,111, 2003	127	2003
Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion S Agarwal, H Yu Bioinformatics 25 (23), 3174-3180, 2009	121	2009
Development, implementation, and a cognitive evaluation of a definitional question answering system for physicians H Yu, M Lee, D Kaufman, J Ely, JA Osheroff, G Hripcsak, J Cimino Journal of biomedical informatics 40 (3), 236-251, 2007	121	2007
Neural tree indexers for text understanding T Munkhdalai, H Yu Proceedings of the conference. Association for Computational Linguistics …, 2017	115	2017

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