The Immunological Genome Project: networks of gene expression in immune cells TSP Heng, MW Painter, the Immunological Genome Project Consortium, ... Nature immunology 9 (10), 1091-1094, 2008 | 1824 | 2008 |
MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium F Schembri, S Sridhar, C Perdomo, AM Gustafson, X Zhang, A Ergun, J Lu, ... Proceedings of the National Academy of Sciences 106 (7), 2319-2324, 2009 | 515 | 2009 |
Transcriptional insights into the CD8+ T cell response to infection and memory T cell formation JA Best, DA Blair, J Knell, E Yang, V Mayya, A Doedens, ML Dustin, ... Nature immunology 14 (4), 404-412, 2013 | 377 | 2013 |
Conservation and divergence in the transcriptional programs of the human and mouse immune systems T Shay, V Jojic, O Zuk, K Rothamel, D Puyraimond-Zemmour, T Feng, ... Proceedings of the National Academy of Sciences 110 (8), 2946-2951, 2013 | 348 | 2013 |
A multiply redundant genetic switch'locks in'the transcriptional signature of regulatory T cells W Fu, A Ergun, T Lu, JA Hill, S Haxhinasto, MS Fassett, R Gazit, S Adoro, ... Nature immunology 13 (10), 972-980, 2012 | 309 | 2012 |
ATRX directs binding of PRC2 to Xist RNA and Polycomb targets K Sarma, C Cifuentes-Rojas, A Ergun, A Del Rosario, Y Jeon, F White, ... Cell 159 (4), 869-883, 2014 | 232 | 2014 |
Optimal scheduling of radiotherapy and angiogenic inhibitors A Ergun, K Camphausen, LM Wein Bulletin of mathematical biology 65 (3), 407-424, 2003 | 220 | 2003 |
Meta-analysis of the Alzheimer’s disease human brain transcriptome and functional dissection in mouse models YW Wan, R Al-Ouran, CG Mangleburg, TM Perumal, TV Lee, K Allison, ... Cell reports 32 (2), 2020 | 209 | 2020 |
A network biology approach to prostate cancer A Ergün, CA Lawrence, MA Kohanski, TA Brennan, JJ Collins Molecular systems biology 3 (1), 82, 2007 | 202 | 2007 |
Chromatin topology is coupled to Polycomb group protein subnuclear organization AH Wani, AN Boettiger, P Schorderet, A Ergun, C Münger, RI Sadreyev, ... Nature communications 7 (1), 10291, 2016 | 191 | 2016 |
Cytometry by time-of-flight immunophenotyping identifies a blood Sjögren's signature correlating with disease activity and glandular inflammation M Mingueneau, S Boudaoud, S Haskett, TL Reynolds, G Nocturne, ... Journal of Allergy and Clinical Immunology 137 (6), 1809-1821. e12, 2016 | 184 | 2016 |
Identification and validation of a tumor-infiltrating Treg transcriptional signature conserved across species and tumor types AM Magnuson, E Kiner, A Ergun, JS Park, N Asinovski, A Ortiz-Lopez, ... Proceedings of the National Academy of Sciences 115 (45), E10672-E10681, 2018 | 138 | 2018 |
Shared and distinct transcriptional programs underlie the hybrid nature of iNKT cells NR Cohen, PJ Brennan, T Shay, GF Watts, M Brigl, J Kang, MB Brenner Nature immunology 14 (1), 90-99, 2013 | 134 | 2013 |
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling MW Painter, S Davis, RR Hardy, D Mathis, C Benoist, Y Zhou, S Shinton, ... The Journal of Immunology 186 (5), 3047-3057, 2011 | 125 | 2011 |
microRNA regulatory network inference identifies miR-34a as a novel regulator of TGF-β signaling in glioblastoma G Genovese, A Ergun, SA Shukla, B Campos, J Hanna, P Ghosh, ... Cancer discovery 2 (8), 736-749, 2012 | 124 | 2012 |
BIN1 favors the spreading of Tau via extracellular vesicles A Crotti, HR Sait, KM McAvoy, K Estrada, A Ergun, S Szak, G Marsh, ... Scientific Reports 9 (1), 9477, 2019 | 123 | 2019 |
Interindividual variation in human T regulatory cells A Ferraro, AM D’Alise, T Raj, N Asinovski, R Phillips, A Ergun, ... Proceedings of the National Academy of Sciences 111 (12), E1111-E1120, 2014 | 123 | 2014 |
Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods A Ergun, R Barbieri, UT Eden, MA Wilson, EN Brown IEEE Transactions on Biomedical Engineering 54 (3), 419-428, 2007 | 99 | 2007 |
Differential splicing across immune system lineages A Ergun, G Doran, JC Costello, HH Paik, JJ Collins, D Mathis, C Benoist, ... Proceedings of the National Academy of Sciences 110 (35), 14324-14329, 2013 | 92 | 2013 |
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression E Patrick, M Taga, A Ergun, B Ng, W Casazza, M Cimpean, C Yung, ... PLOS Computational Biology 16 (8), e1008120, 2020 | 83 | 2020 |