フォロー
Tazro Ohta
Tazro Ohta
Institute for Advanced Academic Research, Chiba University
確認したメール アドレス: chiba-u.jp - ホームページ
タイトル
引用先
引用先
Ch IP‐Atlas: a data‐mining suite powered by full integration of public Ch IP‐seq data
S Oki, T Ohta, G Shioi, H Hatanaka, O Ogasawara, Y Okuda, H Kawaji, ...
EMBO reports 19 (12), e46255, 2018
5992018
ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data
Z Zou, T Ohta, F Miura, S Oki
Nucleic acids research 50 (W1), W175-W182, 2022
1512022
Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements
T Amariuta, K Ishigaki, H Sugishita, T Ohta, M Koido, KK Dey, K Matsuda, ...
Nature genetics 52 (12), 1346-1354, 2020
1392020
Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive
T Nakazato, T Ohta, H Bono
PLoS One 8 (10), e77910, 2013
912013
Robotic crowd biology with Maholo LabDroids
N Yachie, T Natsume
Nature biotechnology 35 (4), 310-312, 2017
732017
GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation
C Terao, Y Momozawa, K Ishigaki, E Kawakami, M Akiyama, PR Loh, ...
Nature communications 10 (1), 4719, 2019
592019
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data
E Kawakami, S Nakaoka, T Ohta, H Kitano
Nucleic Acids Research 44 (11), 5010-5021, 2016
272016
Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions
S Oki, T Ohta, G Shioi, H Hatanaka, O Ogasawara, Y Okuda, H Kawaji, ...
BioRxiv, 262899, 2018
172018
Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive
T Ohta, T Nakazato, H Bono
GigaScience 6 (6), gix029, 2017
142017
Squalomix: shark and ray genome analysis consortium and its data sharing platform
O Nishimura, J Rozewicki, K Yamaguchi, K Tatsumi, Y Ohishi, T Ohta, ...
F1000Research 11, 2022
122022
Reproducible scientific computing environment with overlay cloud architecture
S Yokoyama, Y Masatani, T Ohta, O Ogasawara, N Yoshioka, K Liu, ...
2016 IEEE 9th International Conference on Cloud Computing (CLOUD), 774-781, 2016
122016
Sapporo: a workflow execution service that encourages the reuse of workflows in various languages in bioinformatics
H Suetake, T Tanjo, M Ishii, B P. Kinoshita, T Fujino, T Hachiya, ...
F1000Research 11, 889, 2022
92022
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
T Ohta, T Tanjo, O Ogasawara
Gigascience 8 (4), giz052, 2019
92019
BioHackathon 2015: Semantics of data for life sciences and reproducible research
RA Vos, T Katayama, H Mishima, S Kawano, S Kawashima, JD Kim, ...
F1000Research 9, 2020
82020
TogoID: an exploratory ID converter to bridge biological datasets
S Ikeda, H Ono, T Ohta, H Chiba, Y Naito, Y Moriya, S Kawashima, ...
Bioinformatics 38 (17), 4194-4199, 2022
72022
In silico integration of thousands of epigenetic datasets into 707 cell type regulatory annotations improves the trans-ethnic portability of polygenic risk scores
T Amariuta, K Ishigaki, H Sugishita, T Ohta, K Matsuda, Y Murakami, ...
bioRxiv, 2020.02. 21.959510, 2020
72020
Intercloud brokerages based on PLS method for deploying infrastructures for big data analytics
K Miura, T Ohta, C Powell, M Munetomo
2016 IEEE International Conference on Big Data (Big Data), 2097-2102, 2016
72016
ChIP-Atlas
S Oki, T Ohta
Practical Guide to Life Science Databases, 95-116, 2021
52021
A workflow reproducibility scale for automatic validation of biological interpretation results
H Suetake, T Fukusato, T Igarashi, T Ohta
Gigascience 12, giad031, 2023
42023
ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq 465 data
O Shinya, O Tazro
EMBO Rep, 2018
32018
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