Brendan Frey

Cited by

	All	Since 2015
Citations	40784	21143
h-index	74	50
i10-index	178	112

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Co-authors

Benjamin J. BlencoweProfessor, University of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Frank R. KschischangProfessor of Electrical and Computer Engineering, University of TorontoVerified email at comm.utoronto.ca
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
Babak AlipanahiGoogle AI, GenomicsVerified email at google.com
Hui Yuan XiongRenaissance TechnologiesVerified email at psi.toronto.edu
Anitha KannanCuraiVerified email at curai.com
Geoffrey HintonEmeritus Prof. Comp Sci, U.Toronto & Engineering Fellow, GoogleVerified email at cs.toronto.edu
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Alex AceroSr. Director, AppleVerified email at ieee.org
Janet RossantUniversity of TorontoVerified email at sickkids.ca
Li DengChief AI Officer, CitadelVerified email at ieee.org
Thomas KislingerProfessor, University of TorontoVerified email at utoronto.ca
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Manuel IrimiaCentre for Genomic RegulationVerified email at crg.eu
Nuno Barbosa-MoraisResearch Group Leader, Instituto de Medicina Molecular - LisbonVerified email at medicina.ulisboa.pt
Scherer, Stephen W.The Hospital for Sick Children, Peter Gilgan Centre for Research and Learning (PGCRL), 686 Bay StVerified email at sickkids.ca
Vladimir JojicCalicoVerified email at calicolabs.com
Brian CoxAssociate Professor, Dept. of Physiology, University of TorontoVerified email at utoronto.ca
Tomas BabakQueen's UniversityVerified email at queensu.ca

Brendan Frey

Founder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of Toronto

Verified email at psi.toronto.edu - Homepage

Drug development Artificial Intelligence Machine learning Computational biology Genome biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Factor graphs and the sum-product algorithm FR Kschischang, BJ Frey, HA Loeliger IEEE Transactions on information theory 47 (2), 498-519, 2001	7137	2001
Clustering by passing messages between data points BJ Frey, D Dueck science 315 (5814), 972-976, 2007	6041	2007
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe Nature genetics 40 (12), 1413-1415, 2008	3208	2008
Adversarial autoencoders A Makhzani, J Shlens, N Jaitly, I Goodfellow, B Frey arXiv preprint arXiv:1511.05644, 2015	1494	2015
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning B Alipanahi, A Delong, MT Weirauch, BJ Frey Nature biotechnology 33 (8), 831-838, 2015	1485	2015
The" wake-sleep" algorithm for unsupervised neural networks GE Hinton, P Dayan, BJ Frey, RM Neal Science 268 (5214), 1158-1161, 1995	1126	1995
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013	986	2013
Deciphering the splicing code Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai, BJ Blencowe, ... Nature 465 (7294), 53-59, 2010	885	2010
The human splicing code reveals new insights into the genetic determinants of disease HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ... Science 347 (6218), 2015	876	2015
The evolutionary landscape of alternative splicing in vertebrate species NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ... Science 338 (6114), 1587-1593, 2012	766	2012
Graphical models for machine learning and digital communication BJ Frey, JF Brendan, BJ Frey MIT press, 1998	738	1998
Iterative decoding of compound codes by probability propagation in graphical models FR Kschischang, BJ Frey IEEE Journal on Selected Areas in Communications 16 (2), 219-230, 1998	515	1998
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ... Cell 125 (1), 173-186, 2006	504	2006
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast AB Parsons, A Lopez, IE Givoni, DE Williams, CA Gray, J Porter, G Chua, ... Cell 126 (3), 611-625, 2006	480	2006
Using expression profiling data to identify human microRNA targets JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ... Nature methods 4 (12), 1045-1049, 2007	428	2007
A revolution: Belief propagation in graphs with cycles BJ Frey, DJC MacKay Advances in neural information processing systems, 479-485, 1998	427	1998
Widespread intron retention in mammals functionally tunes transcriptomes U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ... Genome research 24 (11), 1774-1786, 2014	403	2014
Deep learning of the tissue-regulated splicing code MKK Leung, HY Xiong, LJ Lee, BJ Frey Bioinformatics 30 (12), i121-i129, 2014	390	2014
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder RKC Yuen, D Merico, M Bookman, JL Howe, B Thiruvahindrapuram, ... Nature neuroscience 20 (4), 602-611, 2017	363	2017
The functional landscape of mouse gene expression W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, ... Journal of biology 3 (5), 1-22, 2004	354	2004

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