Wataru Shinoda

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Michael L KleinTemple UniversityVerified email at temple.edu
都築誠二 Seiji Tsuzuki産業技術総合研究所、上級主任研究員 National Institute of Advanced Industrial Science and TechnologyVerified email at aist.go.jp
Russell DeVaneProcter & GambleVerified email at pg.com
Masayoshi WatanabeYokohama National University, Institute of Advanced SciencesVerified email at ynu.ac.jp
Steven NielsenAssociate Professor of Chemistry, University of Texas at DallasVerified email at utdallas.edu
Kaoru DokkoYokohama National UniversityVerified email at ynu.ac.jp
Kazuhide UenoYokohama National UniversityVerified email at ynu.ac.jp
Shingo UrataAGC Inc.Verified email at agc.com
An-Tsung KuoAGC Inc.Verified email at agc.com
Motoyuki ShigaJapan Atomic Energy AgencyVerified email at jaea.go.jp
Sangjae SeoKorea Institute of Science and Technology InformationVerified email at kisti.re.kr
Takenobu NakamuraNational Institute of Advanced Industrial Science and Technology(AIST)Verified email at aist.go.jp
Michio Murata大阪大学蛋白質研究所, Institute for Protein Research, Osaka UniversityVerified email at chem.sci.osaka-u.ac.jp
Kazushi FujimotoKansai UnviersityVerified email at kansai-u.ac.jp
Simona PercecResearch Professor, Department of Chemistry, College of Science and Engineering, Temple UniversityVerified email at temple.edu
Stefano VanniProfessor, University of FribourgVerified email at unifr.ch
Nobuaki MatsumoriProfessor of Chemistry, Kyushu UniversityVerified email at chem.kyushu-univ.jp
sharon loverdeProfessor of Chemistry, City University of New York, College of Staten IslandVerified email at csi.cuny.edu
Giacomo FiorinStaff scientist, National Institutes of HealthVerified email at nih.gov
David LeBardHead of Enhanced Sampling, OpenEye Scientific Software Inc.Verified email at eyesopen.com

Wataru Shinoda

Okayama University

Verified email at okayama-u.ac.jp - Homepage

Molecular Dynamics Simulation Lipid Membrane Soft Matter Multiscale Modeling


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Rapid estimation of elastic constants by molecular dynamics simulation under constant stress W Shinoda, M Shiga, M Mikami Physical Review B 69 (13), 134103, 2004	1316	2004
Coarse-graining of condensed phase and biomolecular systems GA Voth CRC Press, 2008	777	2008
Large-scale molecular dynamics simulations of self-assembling systems ML Klein, W Shinoda science 321 (5890), 798-800, 2008	520	2008
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants W Shinoda, R DeVane, ML Klein Molecular Simulation 33 (1-2), 27-36, 2007	516	2007
Permeability across lipid membranes W Shinoda Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2254-2265, 2016	299	2016
Molecular dynamics simulations of ionic liquids: cation and anion dependence of self-diffusion coefficients of ions S Tsuzuki, W Shinoda, H Saito, M Mikami, H Tokuda, M Watanabe The Journal of Physical Chemistry B 113 (31), 10641-10649, 2009	297	2009
Zwitterionic lipid assemblies: molecular dynamics studies of monolayers, bilayers, and vesicles using a new coarse grain force field W Shinoda, R DeVane, ML Klein The Journal of Physical Chemistry B 114 (20), 6836-6849, 2010	296	2010
Coarse-grained molecular modeling of non-ionic surfactant self-assembly W Shinoda, R DeVane, ML Klein Soft Matter 4 (12), 2454-2462, 2008	279	2008
Direct evidence for Li ion hopping conduction in highly concentrated sulfolane-based liquid electrolytes K Dokko, D Watanabe, Y Ugata, ML Thomas, S Tsuzuki, W Shinoda, ... The Journal of Physical Chemistry B 122 (47), 10736-10745, 2018	244	2018
Molecular dynamics simulation of swollen membrane of perfluorinated ionomer S Urata, J Irisawa, A Takada, W Shinoda, S Tsuzuki, M Mikami The Journal of Physical Chemistry B 109 (9), 4269-4278, 2005	243	2005
Molecular dynamics study on the effects of chain branching on the physical properties of lipid bilayers: 2. Permeability W Shinoda, M Mikami, T Baba, M Hato The Journal of Physical Chemistry B 108 (26), 9346-9356, 2004	158	2004
Transferable coarse grain nonbonded interaction model for amino acids R DeVane, W Shinoda, PB Moore, ML Klein Journal of Chemical Theory and Computation 5 (8), 2115-2124, 2009	143	2009
Cholesterol effect on water permeability through DPPC and PSM lipid bilayers: a molecular dynamics study H Saito, W Shinoda The Journal of Physical Chemistry B 115 (51), 15241-15250, 2011	138	2011
Computer simulation studies of self-assembling macromolecules W Shinoda, R DeVane, ML Klein Current Opinion in Structural Biology 22 (2), 175-186, 2012	130	2012
Rigid‐body dynamics in the isothermal‐isobaric ensemble: A test on the accuracy and computational efficiency W Shinoda, M Mikami Journal of Computational Chemistry 24 (8), 920-930, 2003	121	2003
A Voronoi analysis of lipid area fluctuation in a bilayer W Shinoda, S Okazaki The Journal of Chemical Physics 109 (4), 1517-1521, 1998	116	1998
Structures of [Li (glyme)]+ complexes and their interactions with anions in equimolar mixtures of glymes and Li [TFSA]: analysis by molecular dynamics simulations S Tsuzuki, W Shinoda, M Matsugami, Y Umebayashi, K Ueno, T Mandai, ... Physical Chemistry Chemical Physics 17 (1), 126-129, 2014	109	2014
United-atom acyl chains for CHARMM phospholipids J Hénin, W Shinoda, ML Klein The Journal of Physical Chemistry B 112 (23), 7008-7015, 2008	102	2008
Molecular dynamics study of bipolar tetraether lipid membranes W Shinoda, K Shinoda, T Baba, M Mikami Biophysical Journal 89 (5), 3195-3202, 2005	97	2005
Comparative molecular dynamics study of ether-and ester-linked phospholipid bilayers K Shinoda, W Shinoda, T Baba, M Mikami The Journal of Chemical Physics 121 (19), 9648-9654, 2004	95	2004

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