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Pooja Kathail
Pooja Kathail
Verified email at berkeley.edu
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Year
Recovering gene interactions from single-cell data using data diffusion
D Van Dijk, R Sharma, J Nainys, K Yim, P Kathail, AJ Carr, C Burdziak, ...
Cell 174 (3), 716-729. e27, 2018
14042018
Wishbone identifies bifurcating developmental trajectories from single-cell data
M Setty, MD Tadmor, S Reich-Zeliger, O Angel, TM Salame, P Kathail, ...
Nature biotechnology 34 (6), 637-645, 2016
6352016
MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data
D Dijk, J Nainys, R Sharma, P Kaithail, AJ Carr, KR Moon, L Mazutis, ...
BioRxiv, 111591, 2017
1732017
Personal transcriptome variation is poorly explained by current genomic deep learning models
C Huang, RW Shuai, P Baokar, R Chung, R Rastogi, P Kathail, ...
Nature Genetics 55 (12), 2056-2059, 2023
192023
Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function
GB Loeb, P Kathail, R Shuai, R Chung, R Grona, S Peddada, V Sevim, ...
bioRxiv, 2024.06. 18.599625, 2024
12024
Current genomic deep learning models display decreased performance in cell type specific accessible regions
P Kathail, RW Shuai, R Chung, CJ Ye, GB Loeb, NM Ioannidis
bioRxiv, 2024
2024
Genetic variants associated with cell-type-specific intra-individual gene expression variability reveal new mechanisms of genome regulation
A Xue, J Alquicira-Hernández, ASE Cuomo, A Senabouth, G Gordon, ...
2024
Characterizing uncertainty in predictions of genomic sequence-to-activity models
A Bajwa, R Rastogi, P Kathail, RW Shuai, N Ioannidis
Machine Learning in Computational Biology, 279-297, 2024
2024
Population Diversity at the Single-Cell Level
MG Gordon, P Kathail, B Choy, MC Kim, T Mazumder, M Gearing, CJ Ye
Annual Review of Genomics and Human Genetics 25, 2024
2024
Genetic variants associated with cell-type-specific intra-individual gene expression variability reveal new mechanisms of genome regulation
JE Powell, A Xue, S Yazar, J Alquicira, A Cuomo, A Senabouth, G Gordon, ...
bioRxiv, 2024.05. 05.592598, 2024
2024
Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response
GC Hartoularos, Y Si, F Zhang, P Kathail, DS Lee, A Ogorodnikov, Y Sun, ...
bioRxiv, 2023.05. 29.542756, 2023
2023
Identification of Kidney Cell-Type-Specific Regulatory Elements Reveals Genetic Variants, Genes, and Cell Types Influencing Kidney Function Heritability: FR-PO305
G Loeb, P Kathail, RW Shuai, KK Cheung, RK Chung, N Ioannidis, ...
Journal of the American Society of Nephrology 33 (11S), 408, 2022
2022
Assessing the utility of genomic deep learning models for disease-relevant variant effect prediction
P Kathail, R Shuai, R Chung, CJ Ye, G Loeb, NM Ioannidis
International Conference on Machine Learning (ICML) Workshop on …, 2022
2022
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