フォロー
Zachary Fox
Zachary Fox
Research Scientist for AI in Health
確認したメール アドレス: ornl.gov - ホームページ
タイトル
引用先
引用先
Integrating single-molecule experiments and discrete stochastic models to understand heterogeneous gene transcription dynamics
B Munsky, Z Fox, G Neuert
Methods 85, 12-21, 2015
922015
Distribution shapes govern the discovery of predictive models for gene regulation
B Munsky, G Li, ZR Fox, DP Shepherd, G Neuert
Proceedings of the National Academy of Sciences 115 (29), 7533-7538, 2018
842018
Nonspecific transcription factor binding can reduce noise in the expression of downstream proteins
M Soltani, P Bokes, Z Fox, A Singh
Physical biology 12 (5), 055002, 2015
542015
Finite state projection based bounds to compare chemical master equation models using single-cell data
Z Fox, G Neuert, B Munsky
Journal of Chemical Physics 145, 2016
432016
Aging power spectrum of membrane protein transport and other subordinated random walks
ZR Fox, E Barkai, D Krapf
Nature communications 12 (1), 6162, 2021
302021
The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experiments
ZR Fox, B Munsky
PLoS computational biology 15 (1), e1006365, 2019
282019
Enabling reactive microscopy with MicroMator
ZR Fox, S Fletcher, A Fraisse, C Aditya, S Sosa-Carrillo, J Petit, S Gilles, ...
Nature Communications 13 (1), 2199, 2022
222022
Bayesian estimation for stochastic gene expression using multifidelity models
HD Vo, Z Fox, A Baetica, B Munsky
The Journal of Physical Chemistry B 123 (10), 2217-2234, 2019
162019
Disorder, oscillatory dynamics and state switching: the role of c-Myc
N Rangarajan, Z Fox, A Singh, P Kulkarni, G Rangarajan
Journal of Theoretical Biology 386, 105-114, 2015
132015
Computational design and interpretation of single-RNA translation experiments
LU Aguilera, W Raymond, ZR Fox, M May, E Djokic, T Morisaki, ...
PLoS computational biology 15 (10), e1007425, 2019
102019
Adaptive language model training for molecular design
AE Blanchard, D Bhowmik, Z Fox, J Gounley, J Glaser, BS Akpa, S Irle
Journal of Cheminformatics 15 (1), 1-12, 2023
72023
MicroMator: Open and flexible software for reactive microscopy
ZR Fox, S Fletcher, A Fraisse, C Aditya, S Sosa-Carrillo, S Gilles, ...
bioRxiv, 2021.03. 12.435206, 2021
72021
Optimal design of single-cell experiments within temporally fluctuating environments
ZR Fox, G Neuert, B Munsky
Complexity 2020, 1-15, 2020
72020
Diverse cell stimulation kinetics identify predictive signal transduction models
H Jashnsaz, ZR Fox, JJ Hughes, G Li, B Munsky, G Neuert
Iscience 23 (10), 2020
62020
Stochasticity or Noise in Biochemical Reactions
Z Fox, B Munsky
arXiv preprint arXiv:1708.09264, 2017
52017
Blackout Diffusion: Generative Diffusion Models in Discrete-State Spaces
JE Santos, ZR Fox, N Lubbers, YT Lin
arXiv preprint arXiv:2305.11089, 2023
42023
Development of the Senseiver for efficient field reconstruction from sparse observations
JE Santos, ZR Fox, A Mohan, D O’Malley, H Viswanathan, N Lubbers
Nature Machine Intelligence, 2023
32023
Building predictive signaling models by perturbing yeast cells with time-varying stimulations resulting in distinct signaling responses
H Jashnsaz, ZR Fox, B Munsky, G Neuert
STAR protocols 2 (3), 100660, 2021
32021
Bayesian filtering for model predictive control of stochastic gene expression in single cells
Z Fox, G Batt, J Ruess
Physical Biology, 2023
22023
Transferring a molecular foundation model for polymer property predictions
P Zhang, L Kearney, D Bhowmik, Z Fox, AK Naskar, J Gounley
arXiv preprint arXiv:2310.16958, 2023
12023
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