Johan A. Grahnen
Johan A. Grahnen
Unknown affiliation
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Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
TL Parchman, KS Geist, JA Grahnen, CW Benkman, CA Buerkle
BMC genomics 11 (1), 1-16, 2010
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
Toward a general model for the evolutionary dynamics of gene duplicates
A Konrad, AI Teufel, JA Grahnen, DA Liberles
Genome biology and evolution 3, 1197-1209, 2011
Biophysical and structural considerations for protein sequence evolution
JA Grahnen, P Nandakumar, J Kubelka, DA Liberles
BMC evolutionary biology 11 (1), 1-18, 2011
The Evolution of Protein Structures and Structural Ensembles Under Functional Constraint
J Siltberg-Liberles, JA Grahnen, DA Liberles
Genes 2 (4), 748-762, 2011
Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropy
DA Liberles, MDM Tisdell, JA Grahnen
Proceedings of the Royal Society B: Biological Sciences 278 (1714), 1930-1935, 2011
DFT-Based Simulations of IR Amide I′ Spectra for a Small Protein in Solution. Comparison of Explicit and Empirical Solvent Models
JA Grahnen, KE Amunson, J Kubelka
The Journal of Physical Chemistry B 114 (40), 13011-13020, 2010
Consensus sequence identification
PY Lum, E Cadag, J Grahnen, J Lewis, H Sexton
US Patent 10,102,271, 2018
CASS: Protein sequence simulation with explicit genotype-phenotype mapping
JA Grahnen, DA Liberles
Trends in Evolutionary Biology 4 (1), e9-e9, 2012
Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution
JA Grahnen, J Kubelka, DA Liberles
Journal of molecular evolution 73 (1), 23-33, 2011
Modeling Proteins at the Interface of Structure, Evolution, and Population Genetics
AI Teufel, JA Grahnen, DA Liberles
Computational Modeling of Biological Systems, 347-361, 2012
Novel small molecules induced ROS accumulation and antitumor activity based on an oxidative stress gene signature.
AA Protter, V Phan, T Mizuno, K Kim, B Louie, S Elmer, D Herman, ...
Journal of Clinical Oncology 36 (15_suppl), e14575-e14575, 2018
Modeling the Influence of Protein Structure, Function and Biophysics on the Evolution of Protein-coding Sequences at the Genic and Genomic Levels
JA Grahnen
University of Wyoming, 2012
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