| Cellular prion protein targets amyloid-β fibril ends via its C-terminal domain to prevent elongation E Bove-Fenderson, R Urano, JE Straub, DA Harris Journal of Biological Chemistry 292 (41), 16858-16871, 2017 | 36 | 2017 |
| Aerosol-OT surfactant forms stable reverse micelles in apolar solvent in the absence of water R Urano, GA Pantelopulos, JE Straub The Journal of Physical Chemistry B 123 (11), 2546-2557, 2019 | 29 | 2019 |
| Position-dependent diffusion constant of molecules in heterogeneous systems as evaluated by the local mean squared displacement T Nagai, S Tsurumaki, R Urano, K Fujimoto, W Shinoda, S Okazaki Journal of Chemical Theory and Computation 16 (12), 7239-7254, 2020 | 23 | 2020 |
| Prediction of self‐diffusion coefficients of chemically diverse pure liquids by all‐atom molecular dynamics simulations H Baba, R Urano, T Nagai, S Okazaki Journal of Computational Chemistry 43 (28), 1892-1900, 2022 | 11 | 2022 |
| Characterization of dynamics and mechanism in the self-assembly of AOT reverse micelles R Urano, GA Pantelopulos, S Song, JE Straub The Journal of Chemical Physics 149 (14), 2018 | 8 | 2018 |
| All-atom molecular dynamics study of hepatitis B virus containing pregenome RNA in solution K Fujimoto, Y Yamaguchi, R Urano, W Shinoda, T Ishikawa, K Omagari, ... The Journal of Chemical Physics 155 (14), 2021 | 5 | 2021 |
| Designed-walk replica-exchange method for simulations of complex systems R Urano, Y Okamoto Computer Physics Communications 196, 380-383, 2015 | 5 | 2015 |
| Free energy profile of permeation of Entecavir through Hepatitis B virus capsid studied by molecular dynamics calculation K Fujimoto, M Fukai, R Urano, W Shinoda, T Ishikawa, K Omagari, ... Pure and Applied Chemistry 92 (10), 1585-1594, 2020 | 4 | 2020 |
| Exact long-range Coulombic energy calculation for net charged systems neutralized by uniformly distributed background charge using fast multipole method and its application to … R Urano, W Shinoda, N Yoshii, S Okazaki The Journal of Chemical Physics 152 (24), 2020 | 4 | 2020 |
| Deterministic replica-exchange method without pseudo random numbers for simulations of complex systems R Urano, Y Okamoto Computer Physics Communications 197, 128-135, 2015 | 4 | 2015 |
| Predictions of tertiary structures of α-helical membrane proteins by replica-exchange method with consideration of helix deformations R Urano, H Kokubo, Y Okamoto journal of the physical society of japan 84 (8), 084802, 2015 | 4 | 2015 |
| Observation of helix associations for insertion of a retinal molecule and distortions of helix structures in bacteriorhodopsin R Urano, Y Okamoto The Journal of Chemical Physics 143 (23), 2015 | 3 | 2015 |
| New implementations of replica-exchange method for simulations of complex systems: Designed-walk and deterministic replica-exchange methods R Urano, Y Okamoto Physics Procedia 68, 100-104, 2015 | 1 | 2015 |
| Complex role of solvation in micelle and reverse micelle environments J Straub, R Urano ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016 | | 2016 |
| Prediction of membrane protein structures by replica-exchange method and development of more efficient replica-exchange methods 浦野諒 名古屋大学, 2015 | | 2015 |
| 1P108 Structural change of APP-C99 induced by interactions with cholesterol studied by Replica Exchange Umbrella Sampling (REUS) simulation (03. Membrane proteins, Poster, The … R Urano, JE Straub, Y Okamoto Seibutsu Butsuri 54 (supplement1-2), S158, 2014 | | 2014 |
| Computer Simulations for Predicting Membrane Protein Structures with the Replica-Exchange Methods and Implicit Membrane Model of a Restricted Configurational Space R Urano, Y Okamoto Biophysical Journal 106 (2), 655a, 2014 | | 2014 |
| 1P108 レプリカ交換アンブレラサンプリングシミュレーションでのコレステロール分子との相互作用によるアミロイド前駆体の C99 単量体の構造変化 (03. 膜蛋白質, ポスター, 第 52 回日本生物物理学会年会 (2014 年度)) U Ryo, E Straub John, O Yuko 生物物理 54 (supplement1-2), S158, 2014 | | 2014 |
| 3PT130 Prediction of α-helical membrane protein structures by replica-exchange simulations with implicit membrane model (The 50th Annual Meeting of the Biophysical Society of … R Urano, Y Okamoto Seibutsu Butsuri 52 (supplement), S163, 2012 | | 2012 |
| Prediction of alpha-helical membrane protein structures by replica-exchange Monte Carlo method with implicit membrane model R Urano, Y Okamoto PROTEIN SCIENCE 21, 90-90, 2012 | | 2012 |
