| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1071 | 2010 |
| The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote D Schübeler, DM MacAlpine, D Scalzo, C Wirbelauer, C Kooperberg, ... Genes & development 18 (11), 1263-1271, 2004 | 1004 | 2004 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 975 | 2011 |
| Unlocking the secrets of the genome SE Celniker, LAL Dillon, MB Gerstein, KC Gunsalus, S Henikoff, ... Nature 459 (7249), 927-930, 2009 | 970 | 2009 |
| A cis-regulatory map of the Drosophila genome N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ... Nature 471 (7339), 527-531, 2011 | 567 | 2011 |
| Conserved nucleosome positioning defines replication origins ML Eaton, K Galani, S Kang, SP Bell, DM MacAlpine Genes & development 24 (8), 748-753, 2010 | 427 | 2010 |
| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 411 | 2014 |
| Epigenome characterization at single base-pair resolution JG Henikoff, JA Belsky, K Krassovsky, DM MacAlpine, S Henikoff Proceedings of the National Academy of Sciences 108 (45), 18318-18323, 2011 | 370 | 2011 |
| Coordination of replication and transcription along a Drosophila chromosome DM MacAlpine, HK Rodríguez, SP Bell Genes & development 18 (24), 3094-3105, 2004 | 369 | 2004 |
| Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading HK MacAlpine, R Gordân, SK Powell, AJ Hartemink, DM MacAlpine Genome research 20 (2), 201-211, 2010 | 322 | 2010 |
| Co-orientation of replication and transcription preserves genome integrity A Srivatsan, A Tehranchi, DM MacAlpine, JD Wang PLoS genetics 6 (1), e1000810, 2010 | 230 | 2010 |
| Chromatin and DNA replication DM MacAlpine, G Almouzni Cold Spring Harbor perspectives in biology 5 (8), a010207, 2013 | 219 | 2013 |
| Chromatin signatures of the Drosophila replication program ML Eaton, JA Prinz, HK MacAlpine, G Tretyakov, PV Kharchenko, ... Genome research 21 (2), 164-174, 2011 | 205 | 2011 |
| Expression in Aneuploid Drosophila S2 Cells Y Zhang, JH Malone, SK Powell, V Periwal, E Spana, DM MacAlpine, ... PLoS biology 8 (2), e1000320, 2010 | 181 | 2010 |
| DNA replication origins—where do we begin? MN Prioleau, DM MacAlpine Genes & development 30 (15), 1683-1697, 2016 | 179 | 2016 |
| Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb–MuvB/dREAM complex in proliferating cells D Georlette, S Ahn, DM MacAlpine, E Cheung, PW Lewis, EL Beall, ... Genes & development 21 (22), 2880-2896, 2007 | 179 | 2007 |
| Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila O Bell, C Wirbelauer, M Hild, AND Scharf, M Schwaiger, DM MacAlpine, ... The EMBO journal 26 (24), 4974-4984, 2007 | 174 | 2007 |
| Rare codons regulate KRas oncogenesis BL Lampson, NLK Pershing, JA Prinz, JR Lacsina, WF Marzluff, ... Current Biology 23 (1), 70-75, 2013 | 168 | 2013 |
| Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition SA Lujan, AR Clausen, AB Clark, HK MacAlpine, DM MacAlpine, EP Malc, ... Genome research 24 (11), 1751-1764, 2014 | 162 | 2014 |
| The high mobility group protein Abf2p influences the level of yeast mitochondrial DNA recombination intermediates in vivo DM MacAlpine, PS Perlman, RA Butow Proceedings of the National Academy of Sciences 95 (12), 6739-6743, 1998 | 138 | 1998 |
