Hafumi Nishi
Hafumi Nishi
Graduate school of information sciences, Tohoku University
Verified email at ecei.tohoku.ac.jp
Cited by
Cited by
Phosphorylation in protein-protein binding: effect on stability and function
H Nishi, K Hashimoto, AR Panchenko
Structure 19 (12), 1807-1815, 2011
Molecular mechanisms of disease-causing missense mutations
S Stefl, H Nishi, M Petukh, AR Panchenko, E Alexov
Journal of molecular biology 425 (21), 3919-3936, 2013
Physicochemical mechanisms of protein regulation by phosphorylation
H Nishi, A Shaytan, AR Panchenko
Frontiers in genetics 5, 270, 2014
Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization
K Hashimoto, H Nishi, S Bryant, AR Panchenko
Physical biology 8 (3), 035007, 2011
Cancer missense mutations alter binding properties of proteins and their interaction networks
H Nishi, M Tyagi, S Teng, BA Shoemaker, K Hashimoto, E Alexov, ...
PloS one 8 (6), e66273, 2013
Regulation of protein–protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes
H Nishi, JH Fong, C Chang, SA Teichmann, AR Panchenko
Molecular BioSystems 9 (7), 1620-1626, 2013
Crosstalk between signaling pathways provided by single and multiple protein phosphorylation sites
H Nishi, E Demir, AR Panchenko
Journal of molecular biology 427 (2), 511-520, 2015
Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization
H Nishi, K Hashimoto, T Madej, AR Panchenko
Progress in molecular biology and translational science 117, 3-24, 2013
New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
AR Kinjo, GJ Bekker, H Wako, S Endo, Y Tsuchiya, H Sato, H Nishi, ...
Protein Science 27 (1), 95-102, 2018
Amino acid substitutions at protein–protein interfaces that modulate the oligomeric state
H Nishi, M Ota
Proteins: Structure, Function, and Bioinformatics 78 (6), 1563-1574, 2010
H255Y and K508R missense mutations in tumour suppressor folliculin (FLCN) promote kidney cell proliferation
H Hasumi, Y Hasumi, M Baba, H Nishi, M Furuya, CD Vocke, M Lang, ...
Human molecular genetics 26 (2), 354-366, 2017
Distribution of single‐nucleotide variants on protein–protein interaction sites and its relationship with minor allele frequency
H Nishi, J Nakata, K Kinoshita
Protein Science 25 (2), 316-321, 2016
Cover and spacer insertions: small nonhydrophobic accessories that assist protein oligomerization
H Nishi, R Koike, M Ota
Proteins: Structure, Function, and Bioinformatics 79 (8), 2372-2379, 2011
Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach
KD Yamada, S Omori, H Nishi, M Miyagi
BMC bioinformatics 18 (1), 1-8, 2017
Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins
KD Yamada, H Nishi, J Nakata, K Kinoshita
Biophysics and physicobiology 13, 157-163, 2016
Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex
K Moritsugu, H Nishi, K Inariyama, M Kobayashi, A Kidera
Scientific reports 8 (1), 1-13, 2018
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