Tanvir Alam, PhD

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Sebastian SchmeierTeam Lead Bioinformatics, Evotec SEVerified email at evotec.com
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Reto GulerUniversity of Cape TownVerified email at uct.ac.za
Erik ArnerGSKVerified email at gsk.com
Alistair ForrestHead of Systems Biology and Genomics, Harry Perkins Institute of Medical ResearchVerified email at perkins.uwa.edu.au
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
hideya kawajiRIKEN PMIVerified email at gsc.riken.jp
Frank BrombacherICGEBVerified email at icgeb.org
tamgue ousmanUniversity of Douala Cameroon and IDM/ICGEB, university of cape town, South AfricaVerified email at uct.ac.za
Yulia A MedvedevaResearch Center of Biotechnology RASVerified email at biengi.ac.ru
Suraj P. PariharCIDRI-Africa and IDM, University of Cape TownVerified email at uct.ac.za
Stefan AroldProfessor of Bioscience at King Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
Xin GaoProfessor, Computer Sciences; Associate Director, Computational Bioscience Research CenterVerified email at kaust.edu.sa
James B. BrownLawrence Berkeley National Laboratory; UC Berkeley; Arva Intelligence, Inc.Verified email at lbl.gov
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Gene E. RobinsonDirector of the Institute for Genomic Biology, University of Illinois at Urbana-ChampaignVerified email at illinois.edu
Abdullah M KhamisKing Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
Intikhab AlamKAUSTVerified email at kaust.edu.sa
Haitham AshoorPrincipal Data Scientist at Johnson and JohnsonVerified email at kaust.edu.sa
Mahmut UludagSoftware Developer, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa

Tanvir Alam, PhD

Hamad bin Khalifa University, Doha, Qatar

Verified email at hbku.edu.qa

Machine Learning Deep Learning Bioinformatics Long Non-coding RNA Transcription Regulation


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An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	773	2017
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017	377	2017
Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes T Alam, YA Medvedeva, H Jia, JB Brown, L Lipovich, VB Bajic PloS one 9 (10), e109443, 2014	85	2014
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages S Roy, S Schmeier, B Kaczkowski, E Arner, T Alam, M Ozturk, O Tamgue, ... Scientific reports 8 (1), 1-13, 2018	63	2018
Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics S Roy, S Schmeier, E Arner, T Alam, SP Parihar, M Ozturk, O Tamgue, ... Nucleic acids research 43 (14), 6969-6982, 2015	56	2015
TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions S Schmeier, T Alam, M Essack, VB Bajic Nucleic acids research, gkw1007, 2016	55	2016
Insights into the transcriptional architecture of behavioral plasticity in the honey bee Apis mellifera AM Khamis, AR Hamilton, YA Medvedeva, T Alam, I Alam, M Essack, ... Scientific reports 5 (1), 1-19, 2015	42	2015
How to find a leucine in a haystack? Structure, ligand recognition and regulation of leucine–aspartic acid (LD) motifs T Alam, M Alazmi, X Gao, ST Arold Biochemical Journal 460 (3), 317-329, 2014	42	2014
miRCOVID-19: Potential Targets of Human miRNAs in SARS-CoV-2 for RNA-Based Drug Discovery T Alam, L Lipovich Non-coding RNA 7, 18, 2021	29	2021
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts T Alam, M Uludag, M Essack, A Salhi, H Ashoor, JB Hanks, C Kapfer, ... Nucleic acids research 45 (5), 2838-2848, 2017	29	2017
A comprehensive overview of the COVID-19 literature: machine learning–based bibliometric analysis A Abd-Alrazaq, J Schneider, B Mifsud, T Alam, M Househ, M Hamdi, ... Journal of medical Internet research 23 (3), e23703, 2021	27	2021
Comparative transcriptomics of primary cells in vertebrates T Alam, S Agrawal, J Severin, RS Young, R Andersson, E Arner, ... Genome Research 30 (7), 951-961, 2020	25	2020
Breast mass tumor classification using deep learning ASA Rahman, SB Belhaouari, A Bouzerdoum, H Baali, T Alam, ... 2020 IEEE International Conference on Informatics, IoT, and Enabling …, 2020	19	2020
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining A Salhi, M Essack, T Alam, VP Bajic, L Ma, A Radovanovic, B Marchand, ... RNA Biology, 2017	16	2017
The impact of clinical decision support systems (CDSS) on physicians: a scoping review R Muhiyaddin, AA Abd-Alrazaq, M Househ, T Alam, Z Shah The Importance of Health Informatics in Public Health during a Pandemic, 470-473, 2020	11	2020
Proteome-level assessment of origin, prevalence and function of Leucine-Aspartic Acid (LD) motifs T Alam, M Alazmi, R Naser, F Huser, AA Momin, V Astro, SB Hong, ... Bioinformatics, 2019	10	2019
An Efficient Method to Predict Pneumonia from Chest X-Rays Using Deep Learning Approach U Shah, A Abd-Alrazeq, T Alam, M Househ, Z Shah Studies in Health Technology and Informatics 272, 457-460, 2020	9*	2020
Machine learning models reveal key performance metrics of football players to win matches in Qatar Stars League J Almulla, T Alam IEEE Access, 2020	8	2020
Risk Factors and Comorbidities Associated to Cardiovascular Disease in Qatar: A Machine Learning based Case-Control Study HRH Al-Absi, MA Refaee, AU Rehman, MT Islam, SB Belhaouari, T Alam IEEE Access 9, 29929 - 29941, 2021	7	2021
Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives T Alam, HRH Al-Absi, S Schmeier Non-coding RNA, 2020	7	2020

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