Ivo F. Sbalzarini

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Petros KoumoutsakosHarvard University / ETH ZurichVerified email at seas.harvard.edu
Rajesh RamaswamyMax Planck Institute for the Physics of Complex Systems, Dresden, GermanyVerified email at pks.mpg.de
Christian L. MüllerLudwig-Maximilians-Universität München; Helmholtz Zentrum München; Flatiron Institute, New YorkVerified email at simonsfoundation.org
Ari HeleniusEmeritus Professor of Biochemistry, ETH ZurichVerified email at bc.biol.ethz.ch
Grégory PaulSenior Research Scientist, ETH ZürichVerified email at ee.ethz.ch
Jens Honore WaltherDTU Denmark and ETH Zurich SwitzerlandVerified email at mavt.ethz.ch
Sylvain RebouxZMT, Zurich MedTechVerified email at m4x.org
Omar AwileEPFL Blue Brain ProjectVerified email at epfl.ch
Urs GreberProfessor of Cell BiologyVerified email at mls.uzh.ch
Ömer DemirelSenior Data Engineer at Zurich Insurance LtdVerified email at zurich.com
Yuanhao GongComputer Science, ETH ZurichVerified email at ethz.ch
Ulrik GüntherCASUS & Max Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Nélido González-SegredoPhysics of Complex Systems and Statistical Mechanics, ULB BrusselsVerified email at ulb.ac.be
Bevan Leslie CheesemanMax Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Chiara GabellaEPFL Ecole Polytechnique Fédérale de Lausanne (LCB) / SIB Swiss Institute of BioinformaticsVerified email at sib.swiss
Mark E. AmbühlNestlé ResearchVerified email at rd.nestle.com
Michael BergdorfD. E. Shaw ResearchVerified email at deshawresearch.com
Helge EwersFreie Universität BerlinVerified email at fu-berlin.de
Evangelos KotsalisResearcher at BlueCrest CapitalVerified email at bluecrestcapital.com
Lutz BruschCenter for Information Services and High Performance Computing (ZIH), Technische Universität DresdenVerified email at tu-dresden.de

Ivo F. Sbalzarini

TU Dresden / Max Planck Institute of Molecular Cell Biology and Genetics

Verified email at mpi-cbg.de - Homepage

Scientific Computing Computational Biology Data-driven Modeling High-Performance Computing Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Feature point tracking and trajectory analysis for video imaging in cell biology IF Sbalzarini, P Koumoutsakos Journal of structural biology 151 (2), 182-195, 2005	1350	2005
Objective comparison of particle tracking methods N Chenouard, I Smal, F De Chaumont, M Maška, IF Sbalzarini, Y Gong, ... Nature methods 11 (3), 281-289, 2014	690	2014
Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes H Ewers, AE Smith, IF Sbalzarini, H Lilie, P Koumoutsakos, A Helenius Proceedings of the National Academy of Sciences 102 (42), 15110-15115, 2005	249	2005
PPM–A highly efficient parallel particle–mesh library for the simulation of continuum systems IF Sbalzarini, JH Walther, M Bergdorf, SE Hieber, EM Kotsalis, ... Journal of Computational Physics 215 (2), 566-588, 2006	206	2006
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh A Rizk, G Paul, P Incardona, M Bugarski, M Mansouri, A Niemann, ... Nature protocols 9 (3), 586-596, 2014	181	2014
Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth C Luedeke, SB Frei, I Sbalzarini, H Schwarz, A Spang, Y Barral The Journal of cell biology 169 (6), 897-908, 2005	161	2005
Multiobjective optimization using evolutionary algorithms IF Sbalzarini, S Müller, P Koumoutsakos Proceedings of the summer Program 2000, 63-74, 2000	132	2000
Effects of organelle shape on fluorescence recovery after photobleaching IF Sbalzarini, A Mezzacasa, A Helenius, P Koumoutsakos Biophysical journal 89 (3), 1482-1492, 2005	126	2005
Thermophoretic motion of water nanodroplets confined inside carbon nanotubes HA Zambrano, JH Walther, P Koumoutsakos, IF Sbalzarini Nano letters 9 (1), 66-71, 2009	122	2009
Coupling image restoration and segmentation: a generalized linear model/Bregman perspective G Paul, J Cardinale, IF Sbalzarini International journal of computer vision 104 (1), 69-93, 2013	103	2013
Simulations of (an)isotropic diffusion on curved biological surfaces IF Sbalzarini, A Hayer, A Helenius, P Koumoutsakos Biophysical journal 90 (3), 878-885, 2006	102	2006
A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells JA Helmuth, CJ Burckhardt, P Koumoutsakos, UF Greber, IF Sbalzarini Journal of structural biology 159 (3), 347-358, 2007	95	2007
ClearVolume: open-source live 3D visualization for light-sheet microscopy LA Royer, M Weigert, U Günther, N Maghelli, F Jug, IF Sbalzarini, ... Nature methods 12 (6), 480-481, 2015	90	2015
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks R Ramaswamy, N González-Segredo, IF Sbalzarini The Journal of chemical physics 130 (24), 244104, 2009	85	2009
Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images JA Helmuth, G Paul, IF Sbalzarini BMC bioinformatics 11 (1), 1-12, 2010	79	2010
Antimicrobial peptides induce growth of phosphatidylglycerol domains in a model bacterial membrane AA Polyansky, R Ramaswamy, PE Volynsky, IF Sbalzarini, SJ Marrink, ... The Journal of Physical Chemistry Letters 1 (20), 3108-3111, 2010	78	2010
Histone deacetylase 8 is required for centrosome cohesion and influenza A virus entry Y Yamauchi, H Boukari, I Banerjee, IF Sbalzarini, P Horvath, A Helenius PLoS Pathog 7 (10), e1002316, 2011	76	2011
High‐resolution cell outline segmentation and tracking from phase‐contrast microscopy images ME Ambühl, C Brepsant, JJ Meister, AB Verkhovsky, IF Sbalzarini Journal of microscopy 245 (2), 161-170, 2012	72	2012
Large‐scale parallel discrete element simulations of granular flow A Munjiza, JH Walther, IF Sbalzarini Engineering Computations, 2009	70	2009
Curvature filters efficiently reduce certain variational energies Y Gong, IF Sbalzarini IEEE Transactions on Image Processing 26 (4), 1786-1798, 2017	66	2017

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