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Bhaskar Dasgupta
Bhaskar Dasgupta
Verified email at biods.rcast.u-tokyo.ac.jp
Title
Cited by
Cited by
Year
Expanded turn conformations: Characterization and sequence‐structure correspondence in α‐turns with implications in helix folding
B Dasgupta, L Pal, G Basu, P Chakrabarti
Proteins: Structure, Function, and Bioinformatics 55 (2), 305-315, 2004
412004
Enhanced stability of cis Pro-Pro peptide bond in Pro-Pro-Phe sequence motif
B Dasgupta, P Chakrabarti, G Basu
FEBS letters 581 (23), 4529-4532, 2007
322007
Virtual‐system‐coupled adaptive umbrella sampling to compute free‐energy landscape for flexible molecular docking
J Higo, B Dasgupta, T Mashimo, K Kasahara, Y Fukunishi, H Nakamura
Journal of Computational Chemistry 36 (20), 1489-1501, 2015
292015
310‐Helix adjoining α‐helix and β‐strand: Sequence and structural features and their conservation
L Pal, B Dasgupta, P Chakrabarti
Biopolymers: Original Research on Biomolecules 78 (3), 147-162, 2005
292005
myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme
K Kasahara, B Ma, K Goto, B Dasgupta, J Higo, I Fukuda, T Mashimo, ...
Biophysics and physicobiology 13, 209-216, 2016
232016
pi-Turns: types, systematics and the context of their occurrence in protein structures
B Dasgupta, P Chakrabarti
BMC structural biology 8 (1), 1-14, 2008
172008
Distinct roles of overlapping and non-overlapping regions of hub protein interfaces in recognition of multiple partners
B Dasgupta, H Nakamura, AR Kinjo
Journal of molecular biology 411 (3), 713-727, 2011
152011
Flexible binding simulation by a novel and improved version of virtual-system coupled adaptive umbrella sampling
B Dasgupta, H Nakamura, J Higo
Chemical Physics Letters 662, 327-332, 2016
132016
Reconstruction of low-resolution molecular structures from simulated atomic force microscopy images
B Dasgupta, O Miyashita, F Tama
Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (2), 129420, 2020
112020
Enhancement of canonical sampling by virtual-state transitions
J Higo, K Kasahara, B Dasgupta, H Nakamura
The Journal of Chemical Physics 146 (4), 044104, 2017
112017
Free-energy landscape of molecular interactions between endothelin 1 and human endothelin type B receptor: fly-casting mechanism
J Higo, K Kasahara, M Wada, B Dasgupta, N Kamiya, T Hayami, I Fukuda, ...
Protein Engineering, Design and Selection 32 (7), 297-308, 2019
102019
Counterbalance of ligand‐and self‐coupled motions characterizes multispecificity of ubiquitin
B Dasgupta, H Nakamura, AR Kinjo
Protein Science 22 (2), 168-178, 2013
72013
Water and side‐chain embedded π‐turns
B Dasgupta, S Dey, P Chakrabarti
Biopolymers 101 (5), 441-453, 2014
62014
Rigid‐body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape‐dependent manner
B Dasgupta, H Nakamura, AR Kinjo
Proteins: Structure, Function, and Bioinformatics 82 (1), 77-89, 2014
52014
Faster Binding Free-Energy Landscape Calculation by Virtual-State Coupled Adaptive Umbrella Sampling
B Dasgupta, H Junichi, H Nakamura
Biophysical Journal 110 (3), 55a, 2016
42016
Reconstruction of three-dimensional conformations of bacterial ClpB from high-speed atomic-force-microscopy images
B Dasgupta, O Miyashita, T Uchihashi, F Tama
Frontiers in Molecular Biosciences, 710, 2021
32021
Specific non-local interactions are not necessary for recovering native protein dynamics
B Dasgupta, K Kasahara, N Kamiya, H Nakamura, AR Kinjo
PloS one 9 (3), e91347, 2014
12014
Dynamical Methods to Study Interaction in Proteins Facilitating Molecular Understanding of Cancer
B Dasgupta, GJ Bekker, N Kamiya
Handbook of Oxidative Stress in Cancer: Mechanistic Aspects, 1-17, 2020
2020
Virtual system Coupled Adaptive Umbrella Sampling: An efficient method to compute potential of mean force along a reaction-coordinate
B Dasgupta
サイバーメディア HPC ジャーナル 6, 7-11, 2016
2016
2P063 Contact number diffusion model for the normal mode analysis of protein structure (01C. Protein: Property, Poster, The 52nd Annual Meeting of the Biophysical Society of …
B Dasgupta, K Kasahara, N Kamiya, H Nakamura, A Kinjo
Seibutsu Butsuri 54 (supplement1-2), S205, 2014
2014
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Articles 1–20