| CafeMol: A coarse-grained biomolecular simulator for simulating proteins at work H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ... Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011 | 213 | 2011 |
| Folding energy landscape and network dynamics of small globular proteins N Hori, G Chikenji, RS Berry, S Takada Proceedings of the National Academy of Sciences 106 (1), 73-78, 2009 | 64 | 2009 |
| Sequence-dependent Three Interaction Site Model for Single- and Double-stranded DNA D Chakraborty, N Hori, D Thirumalai Journal of Chemical Theory and Computation 14 (7), 3763–3779, 2018 | 54 | 2018 |
| Theory and simulations for RNA folding in mixtures of monovalent and divalent cations HT Nguyen, N Hori, D Thirumalai Proceedings of the National Academy of Sciences 116 (42), 21022-21030, 2019 | 46 | 2019 |
| Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching N Hori, S Takada Journal of Chemical Theory and Computation 8 (9), 3384–3394, 2012 | 43 | 2012 |
| Multiscale methods for protein folding simulations W Li, H Yoshii, N Hori, T Kameda, S Takada Methods 52 (1), 106-114, 2010 | 36 | 2010 |
| Condensates in RNA repeat sequences are heterogeneously organized and exhibit reptation dynamics HT Nguyen, N Hori, D Thirumalai Nature Chemistry 14, 775-785, 2022 | 30 | 2022 |
| Ion Condensation onto Ribozyme Is Site-Specific and Fold-Dependent N Hori, NA Denesyuk, D Thirumalai Biophysical Journal 116 (12), 2400-2410, 2019 | 27 | 2019 |
| Protein collapse is encoded in the folded state architecture HS Samanta, PI Zhuravlev, M Hinczewski, N Hori, S Chakrabarti, ... Soft Matter 13 (19), 3622-3638, 2017 | 27 | 2017 |
| Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension N Hori, NA Denesyuk, D Thirumalai Journal of Molecular Biology 428 (14), 2847-2859, 2016 | 26 | 2016 |
| Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot J Roca, N Hori, S Baral, Y Velmurugu, R Narayanan, P Narayanan, ... Proceedings of the National Academy of Sciences 115 (31), E7313-E7322, 2018 | 24 | 2018 |
| How co-translational folding of multi-domain protein is affected by elongation schedule: molecular simulations T Tanaka, N Hori, S Takada PLoS Computational Biology 11 (7), e1004356, 2015 | 23 | 2015 |
| Molecular simulations of ion effects on the thermodynamics of RNA folding NA Denesyuk, N Hori, D Thirumalai The Journal of Physical Chemistry B 122 (50), 11860-11867, 2018 | 22 | 2018 |
| Shape changes and cooperativity in the folding of the central domain of the 16S ribosomal RNA N Hori, NA Denesyuk, D Thirumalai Proceedings of the National Academy of Sciences 118 (10), e2020837118, 2021 | 20 | 2021 |
| Recognize online handwritten bangla characters using hausdorff distance-based feature S Sen, R Sarkar, K Roy, N Hori Proceedings of the 5th International Conference on Frontiers in Intelligent …, 2017 | 16 | 2017 |
| Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover N Hori, NA Denesyuk, D Thirumalai Journal of Physical Chemistry B 122 (49), 11279-11288, 2018 | 12 | 2018 |
| Handwritten Devanagari numerals recognition using grid based Hausdroff distance S Bhowmik, S Sen, N Hori, R Sarkar, M Nasipuri Computer, Communication and Electrical Technology, 15-18, 2017 | 7 | 2017 |
| Odd–even disparity in the population of slipped hairpins in RNA repeat sequences with implications for phase separation H Maity, HT Nguyen, N Hori, D Thirumalai Proceedings of the National Academy of Sciences 120 (24), e2301409120, 2023 | 3 | 2023 |
| TIS2AA (2017) N Hori | 3 | 2020 |
| Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time N Hori, D Thirumalai Nucleic Acids Research 51 (19), 10737-10751, 2023 | 2 | 2023 |
Devarajan ThirumalaiUniversity of Texas at AustinVerified email at umd.edu
