| A general species delimitation method with applications to phylogenetic placements J Zhang, P Kapli, P Pavlidis, A Stamatakis Bioinformatics 29 (22), 2869-2876, 2013 | 1301 | 2013 |
| Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017 | 285 | 2017 |
| SweeD: likelihood-based detection of selective sweeps in thousands of genomes P Pavlidis, D Živković, A Stamatakis, N Alachiotis Molecular biology and evolution 30 (9), 2224-2234, 2013 | 227 | 2013 |
| A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans P Pavlidis, JD Jensen, W Stephan, A Stamatakis Molecular biology and evolution 29 (10), 3237-3248, 2012 | 189 | 2012 |
| Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations P Pavlidis, JD Jensen, W Stephan Genetics 185 (3), 907-922, 2010 | 143 | 2010 |
| Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene T Tsuchimatsu, K Suwabe, R Shimizu-Inatsugi, S Isokawa, P Pavlidis, ... Nature 464 (7293), 1342-1346, 2010 | 134 | 2010 |
| 1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans M Pybus, GM Dall’Olio, P Luisi, M Uzkudun, A Carreno-Torres, P Pavlidis, ... Nucleic acids research 42 (D1), D903-D909, 2014 | 125 | 2014 |
| OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets N Alachiotis, A Stamatakis, P Pavlidis Bioinformatics 28 (17), 2274-2275, 2012 | 82 | 2012 |
| msABC: a modification of Hudson’s ms to facilitate multi‐locus ABC analysis P Pavlidis, S Laurent, W Stephan Molecular Ecology Resources 10 (4), 723-727, 2010 | 72 | 2010 |
| A survey of methods and tools to detect recent and strong positive selection P Pavlidis, N Alachiotis Journal of Biological Research-Thessaloniki 24 (1), 1-17, 2017 | 57 | 2017 |
| A population genomic approach to map recent positive selection in model species P Pavlidis, S Hutter, W Stephan Molecular Ecology 17 (16), 3585-3598, 2008 | 55 | 2008 |
| Primate genome architecture influences structural variation mechanisms and functional consequences O Gokcumen, V Tischler, J Tica, Q Zhu, RC Iskow, E Lee, MHY Fritz, ... Proceedings of the National Academy of Sciences 110 (39), 15764-15769, 2013 | 54 | 2013 |
| Inference of seed bank parameters in two wild tomato species using ecological and genetic data A Tellier, SJY Laurent, H Lainer, P Pavlidis, W Stephan Proceedings of the National Academy of Sciences 108 (41), 17052-17057, 2011 | 53 | 2011 |
| Selective sweeps in multilocus models of quantitative traits P Pavlidis, D Metzler, W Stephan Genetics 192 (1), 225-239, 2012 | 51 | 2012 |
| Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ... Molecular Biology and Evolution 34 (10), 2704-2715, 2017 | 50 | 2017 |
| The evolution and functional impact of human deletion variants shared with archaic hominin genomes YL Lin, P Pavlidis, E Karakoc, J Ajay, O Gokcumen Molecular biology and evolution 32 (4), 1008-1019, 2015 | 40 | 2015 |
| RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors N Alachiotis, P Pavlidis Communications biology 1 (1), 1-11, 2018 | 32 | 2018 |
| The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story A Bousios, YAI Kourmpetis, P Pavlidis, E Minga, A Tsaftaris, N Darzentas The Plant Journal 69 (3), 475-488, 2012 | 30 | 2012 |
| Identification of X‐linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis N Svetec, A Werzner, R Wilches, P Pavlidis, JM ÁLVAREZ‐CASTRO, ... Molecular ecology 20 (3), 530-544, 2011 | 29 | 2011 |
| Selective Sweep of a cis-Regulatory Sequence in a Non-African Population of Drosophila melanogaster SS Saminadin-Peter, C Kemkemer, P Pavlidis, J Parsch Molecular biology and evolution 29 (4), 1167-1174, 2012 | 27 | 2012 |
Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
