Kinoshita Kengo
Kinoshita Kengo
Verified email at ecei.tohoku.ac.jp - Homepage
TitleCited byYear
PrDOS: prediction of disordered protein regions from amino acid sequence
T Ishida, K Kinoshita
Nucleic acids research 35 (suppl_2), W460-W464, 2007
4722007
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
T Obayashi, K Kinoshita, K Nakai, M Shibaoka, S Hayashi, M Saeki, ...
Nucleic acids research 35 (suppl_1), D863-D869, 2007
3972007
ATTED-II provides coexpressed gene networks for Arabidopsis
T Obayashi, S Hayashi, M Saeki, H Ohta, K Kinoshita
Nucleic acids research 37 (suppl_1), D987-D991, 2009
3802009
Prediction of disordered regions in proteins based on the meta approach
T Ishida, K Kinoshita
Bioinformatics 24 (11), 1344-1348, 2008
2502008
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ...
Nature communications 6, 8018, 2015
2052015
Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site
K Kinoshita, H Nakamura
Protein Science 12 (8), 1589-1595, 2003
1882003
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression
T Obayashi, K Kinoshita
DNA research 16 (5), 249-260, 2009
1642009
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants
T Obayashi, K Nishida, K Kasahara, K Kinoshita
Plant and cell physiology 52 (2), 213-219, 2011
1612011
Identification of protein functions from a molecular surface database, eF-site
K Kinoshita, J Furui, H Nakamura
Journal of structural and functional genomics 2 (1), 9-22, 2002
1522002
COXPRESdb: a database of coexpressed gene networks in mammals
T Obayashi, S Hayashi, M Shibaoka, M Saeki, H Ohta, K Kinoshita
Nucleic acids research 36 (suppl_1), D77-D82, 2007
1492007
ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression
Y Aoki, Y Okamura, S Tadaka, K Kinoshita, T Obayashi
Plant and Cell Physiology 57 (1), e5-e5, 2016
1442016
Structural motif of phosphate-binding site common to various protein superfamilies: all-against-all structural comparison of protein–mononucleotide complexes
K Kinoshita, K Sadanami, A Kidera, N Go
Protein engineering 12 (1), 11-14, 1999
1321999
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1272011
Hub promiscuity in protein-protein interaction networks
A Patil, K Kinoshita, H Nakamura
International journal of molecular sciences 11 (4), 1930-1943, 2010
1262010
eF-site and PDBjViewer: database and viewer for protein functional sites
K Kinoshita, H Nakamura
Bioinformatics 20 (8), 1329-1330, 2004
1232004
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems
Y Okamura, Y Aoki, T Obayashi, S Tadaka, S Ito, T Narise, K Kinoshita
Nucleic acids research 43 (D1), D82-D86, 2015
1152015
Structure‐based prediction of DNA‐binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces
Y Tsuchiya, K Kinoshita, H Nakamura
PROTEINS: structure, Function, and Bioinformatics 55 (4), 885-894, 2004
1062004
Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation
M Ota, K Kinoshita, K Nishikawa
Journal of molecular biology 327 (5), 1053-1064, 2003
1052003
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
T Obayashi, Y Okamura, S Ito, S Tadaka, Y Aoki, M Shirota, K Kinoshita
Plant and Cell Physiology 55 (1), e6-e6, 2014
1042014
Identification of the ligand binding sites on the molecular surface of proteins
K Kinoshita, H Nakamura
Protein Science 14 (3), 711-718, 2005
1032005
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Articles 1–20