Erik Lindahl

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Berk HessKTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Stockholm, SwedenVerified email at scilifelab.se
David van der SpoelProfessor of Biology, Uppsala UniversityVerified email at xray.bmc.uu.se
Mark AbrahamVoxo ABVerified email at kth.se
Szilárd PállResearcher, PDC KTH Royal Institute of TechnologyVerified email at kth.se
Peter KassonProfessor, University of Virginia and Wallenberg Academy Fellow, Uppsala UniversityVerified email at virginia.edu
Pär BjelkmarPublic Health Agency of SwedenVerified email at folkhalsomyndigheten.se
Björn ForsbergKarolinska InstitutetVerified email at dbb.su.se
Roland SchulzIntelVerified email at rschulz.eu
Carsten KutznerMax Planck Institute for Multidisciplinary SciencesVerified email at gwdg.de
Jeremy C SmithUniversity of Tennessee KnoxvilleVerified email at ornl.gov
Dari KimaniusPostdoc at MRC Laboratory of Molecular BiologyVerified email at mrc-lmb.cam.ac.uk
Per LarssonAssociate Professor, Uppsala UniversityVerified email at farmaci.uu.se
Rossen ApostolovResearcher, KTH Royal Institute of TechnologyVerified email at kth.se
Gerrit Groenhofprofessor of chemistry, University of JyväskyläVerified email at jyu.fi
Rebecca J HowardResearcher, Stockholm UniversityVerified email at scilifelab.se
Olle EdholmProfessor, theoretical physics, KTH Verified email at kth.se
Alan E. MarkProfessor of Biophysical Chemistry, University of QueenslandVerified email at uq.edu.au
Yuxuan ZhuangStockholm UniversityVerified email at dbb.su.se
Marc DelarueInstitut Pasteur/CNRS FranceVerified email at pasteur.fr
Magnus LundborgResearcher at KTH, SciLifeLab, SwedenVerified email at scilifelab.se

Erik Lindahl

Professor of Biophysics, Stockholm University & KTH, Science for Life Laboratory

Verified email at dbb.su.se - Homepage

Computational biophysics membrane proteins bioinformatics molecular simulation electrophysiology


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GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation B Hess, C Kutzner, D Van Der Spoel, E Lindahl Journal of chemical theory and computation 4 (3), 435-447, 2008	16033	2008
GROMACS: fast, flexible, and free D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ... Journal of computational chemistry 26 (16), 1701-1718, 2005	15754	2005
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl SoftwareX 1, 19-25, 2015	15288	2015
GROMACS 3.0: a package for molecular simulation and trajectory analysis E Lindahl, B Hess, D Van Der Spoel Molecular modeling annual 7, 306-317, 2001	7702	2001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ... Bioinformatics 29 (7), 845-854, 2013	7054	2013
New tools for automated high-resolution cryo-EM structure determination in RELION-3 J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ... elife 7, e42166, 2018	3557	2018
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl Journal of chemical theory and computation 6 (2), 459-466, 2010	968	2010
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 D Kimanius, BO Forsberg, SHW Scheres, E Lindahl elife 5, e18722, 2016	953	2016
Tackling exascale software challenges in molecular dynamics simulations with GROMACS S Páll, MJ Abraham, C Kutzner, B Hess, E Lindahl Solving Software Challenges for Exascale: International Conference on …, 2015	952	2015
GROMACS user manual version 3.2 D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ... Nijenborgh 4, 9747, 2004	767	2004
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm Biophysical journal 79 (1), 426-433, 2000	716	2000
Molecular dynamics simulations of phospholipid bilayers with cholesterol C Hofsäß, E Lindahl, O Edholm Biophysical journal 84 (4), 2192-2206, 2003	589	2003
the GROMACS development team MJ Abraham, D Van Der Spoel, E Lindahl, B Hess GROMACS user manual version 5 (4), 2016	531*	2016
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION T Nakane, D Kimanius, E Lindahl, SHW Scheres elife 7, e36861, 2018	405	2018
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ... Nature 481 (7382), 525-529, 2012	379	2012
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis E Lindahl, C Azuara, P Koehl, M Delarue Nucleic acids research 34 (suppl_2), W52-W56, 2006	369	2006
Membrane proteins: molecular dynamics simulations E Lindahl, MSP Sansom Current opinion in structural biology 18 (4), 425-431, 2008	361	2008
Prediction of membrane-protein topology from first principles A Bernsel, H Viklund, J Falk, E Lindahl, G Von Heijne, A Elofsson Proceedings of the National Academy of Sciences 105 (20), 7177-7181, 2008	355	2008
Simulation of the spontaneous aggregation of phospholipids into bilayers SJ Marrink, E Lindahl, O Edholm, AE Mark Journal of the American Chemical Society 123 (35), 8638-8639, 2001	343	2001
Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm The Journal of chemical physics 113 (9), 3882-3893, 2000	295	2000

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