Benjamin P Berman
Benjamin P Berman
Associate Professor, The Hebrew University of Jerusalem School of Medicine
Verified email at mail.huji.ac.il - Homepage
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
75352012
The genome sequence of Drosophila melanogaster
MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, ...
Science 287 (5461), 2185, 2000
72052000
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
49752012
Integrated genomic analyses of ovarian carcinoma
D Bell, A Berchuck, M Birrer, J Chien, DW Cramer, F Dao, R Dhir, ...
Nature Publishing Group 474 (7353), 609-615, 2011
48662011
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113-1120, 2013
39112013
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
H Noushmehr, DJ Weisenberger, K Diefes, HS Phillips, K Pujara, ...
Cancer Cell 17 (5), 510-522, 2010
21302010
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43, 2013
18662013
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ...
Proceedings of the National Academy of Sciences 99 (2), 757, 2002
7062002
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
BP Berman, DJ Weisenberger, JF Aman, T Hinoue, Z Ramjan, Y Liu, ...
Nature genetics 44 (1), 40, 2012
5342012
Global analysis of patterns of gene expression during Drosophila embryogenesis
P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ...
Genome biology 8 (7), 1-24, 2007
4442007
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
S Misra, MA Crosby, CJ Mungall, BB Matthews, KS Campbell, P Hradecky, ...
Genome biology 3 (12), research0083, 2002
4362002
Scientific workflow applications on Amazon EC2
G Juve, E Deelman, K Vahi, G Mehta, B Berriman, BP Berman, ...
E-Science Workshops, 2009 5th IEEE International Conference on, 59-66, 2009
3442009
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), 2018
3062018
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
TK Kelly, Y Liu, FD Lay, G Liang, BP Berman, PA Jones
Genome research 22 (12), 2497-2506, 2012
2922012
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila …
BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, ...
Genome biology 5 (9), 1-24, 2004
2672004
Functional enhancers at the gene-poor 8q24 cancer-linked locus
L Jia, G Landan, M Pomerantz, R Jaschek, P Herman, D Reich, C Yan, ...
PLoS genetics 5 (8), e1000597, 2009
2482009
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
Y Liu, KD Siegmund, PW Laird, BP Berman
Genome biology 13 (7), 1-14, 2012
2202012
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
1842015
Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity
L Jia, BP Berman, U Jariwala, X Yan, JP Cogan, A Walters, T Chen, ...
PloS one 3 (11), e3645, 2008
1632008
Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells
TL Chung, RM Brena, G Kolle, SM Grimmond, BP Berman, PW Laird, ...
Stem cells 28 (10), 1848-1855, 2010
1572010
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Articles 1–20