| Adaptive seeds tame genomic sequence comparison SM Kiełbasa, R Wan, K Sato, P Horton, MC Frith Genome research 21 (3), 487-493, 2011 | 1290 | 2011 |
| CentroidFold: a web server for RNA secondary structure prediction K Sato, M Hamada, K Asai, T Mituyama Nucleic acids research 37 (suppl_2), W277-W280, 2009 | 337 | 2009 |
| IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming K Sato, Y Kato, M Hamada, T Akutsu, K Asai Bioinformatics 27 (13), i85-i93, 2011 | 305 | 2011 |
| RNA secondary structure prediction using deep learning with thermodynamic integration K Sato, M Akiyama, Y Sakakibara Nature communications 12 (1), 941, 2021 | 286 | 2021 |
| Prediction of RNA secondary structure using generalized centroid estimators M Hamada, H Kiryu, K Sato, T Mituyama, K Asai Bioinformatics 25 (4), 465-473, 2009 | 266 | 2009 |
| Convolutional neural network based on SMILES representation of compounds for detecting chemical motif M Hirohara, Y Saito, Y Koda, K Sato, Y Sakakibara BMC bioinformatics 19, 83-94, 2018 | 210 | 2018 |
| Generation of a nonhuman primate model of severe combined immunodeficiency using highly efficient genome editing K Sato, R Oiwa, W Kumita, R Henry, T Sakuma, R Ito, R Nozu, T Inoue, ... Cell stem cell 19 (1), 127-138, 2016 | 162 | 2016 |
| MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning Afiahayati, K Sato, Y Sakakibara DNA research: an international journal for rapid publication of reports on …, 2015 | 127 | 2015 |
| RNA secondary structural alignment with conditional random fields K Sato, Y Sakakibara Bioinformatics 21 (suppl 2), ii237-ii242, 2005 | 127 | 2005 |
| Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures H Matsui, K Sato, Y Sakakibara Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings …, 2004 | 111 | 2004 |
| Purification and characterization of double-wall carbon nanotubes synthesized by catalytic chemical vapor deposition on mesoporous silica P Ramesh, T Okazaki, T Sugai, J Kimura, N Kishi, K Sato, Y Ozeki, ... Chemical Physics Letters 418 (4-6), 408-412, 2006 | 100 | 2006 |
| RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming Y Kato, K Sato, M Hamada, Y Watanabe, K Asai, T Akutsu Bioinformatics 26 (18), i460-i466, 2010 | 85 | 2010 |
| Improving the accuracy of predicting secondary structure for aligned RNA sequences M Hamada, K Sato, K Asai Nucleic acids research 39 (2), 393-402, 2011 | 72 | 2011 |
| Tailoring Ti3AlC2 ceramic with high anisotropic physical and mechanical properties HB Zhang, CF Hu, K Sato, S Grasso, M Estili, SQ Guo, K Morita, ... Journal of the european ceramic society 35 (1), 393-397, 2015 | 60 | 2015 |
| Predictions of RNA secondary structure by combining homologous sequence information M Hamada, K Sato, H Kiryu, T Mituyama, K Asai Bioinformatics 25 (12), i330-i338, 2009 | 58 | 2009 |
| Whole genome complete resequencing of Bacillus subtilis natto by combining long reads with high-quality short reads M Kamada, S Hase, K Sato, A Toyoda, A Fujiyama, Y Sakakibara PloS one 9 (10), e109999, 2014 | 57 | 2014 |
| Efficient generation of Knock-in/Knock-out marmoset embryo via CRISPR/Cas9 gene editing W Kumita, K Sato, Y Suzuki, Y Kurotaki, T Harada, Y Zhou, N Kishi, K Sato, ... Scientific reports 9 (1), 12719, 2019 | 56 | 2019 |
| CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score M Hamada, K Sato, H Kiryu, T Mituyama, K Asai Bioinformatics 25 (24), 3236-3243, 2009 | 56 | 2009 |
| Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods M Kamada, S Hase, K Fujii, M Miyake, K Sato, K Kimura, Y Sakakibara PLoS One 10 (10), e0141369, 2015 | 53 | 2015 |
| DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition K Sato, Y Kato, T Akutsu, K Asai, Y Sakakibara Bioinformatics 28 (24), 3218-3224, 2012 | 51 | 2012 |
Yasubumi SakakibaraKeio University, Biosciences and InformaticsVerified email at keio.jp
