| The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ... Nucleic acids research 49 (D1), D605-D612, 2021 | 5987 | 2021 |
| The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ... Nucleic acids research 51 (D1), D638-D646, 2023 | 2155 | 2023 |
| Universal dependencies v1: A multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ... Proceedings of the Tenth International Conference on Language Resources and …, 2016 | 1676 | 2016 |
| BRAT: a web-based tool for NLP-assisted text annotation P Stenetorp, S Pyysalo, G Topić, T Ohta, S Ananiadou, J Tsujii Proceedings of the Demonstrations at the 13th Conference of the European …, 2012 | 1624 | 2012 |
| Bloom: A 176b-parameter open-access multilingual language model T Le Scao, A Fan, C Akiki, E Pavlick, S Ilić, D Hesslow, R Castagné, ... | 1482 | 2023 |
| Overview of BioNLP’09 shared task on event extraction JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii Proceedings of the BioNLP 2009 workshop companion volume for shared task, 1-9, 2009 | 824 | 2009 |
| Distributional semantics resources for biomedical text processing S Pyysalo, F Ginter, H Moen, T Salakoski, S Ananiadou Languages in Biology and Medicine, 2013 | 613* | 2013 |
| BioInfer: a corpus for information extraction in the biomedical domain S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ... BMC bioinformatics 8, 1-24, 2007 | 586 | 2007 |
| Universal Dependencies v2: An evergrowing multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, J Hajič, CD Manning, S Pyysalo, ... arXiv preprint arXiv:2004.10643, 2020 | 560 | 2020 |
| How to train good word embeddings for biomedical NLP B Chiu, G Crichton, A Korhonen, S Pyysalo Proceedings of the 15th workshop on biomedical natural language processing …, 2016 | 432 | 2016 |
| All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski BMC bioinformatics 9, 1-12, 2008 | 385 | 2008 |
| Multilingual is not enough: BERT for Finnish A Virtanen, J Kanerva, R Ilo, J Luoma, J Luotolahti, T Salakoski, F Ginter, ... arXiv preprint arXiv:1912.07076, 2019 | 333 | 2019 |
| Comparative analysis of five protein-protein interaction corpora S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski BMC bioinformatics 9, 1-11, 2008 | 307 | 2008 |
| Overview of BioNLP shared task 2013 C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013 | 289 | 2013 |
| A neural network multi-task learning approach to biomedical named entity recognition G Crichton, S Pyysalo, B Chiu, A Korhonen BMC bioinformatics 18, 1-14, 2017 | 267 | 2017 |
| Event extraction for systems biology by text mining the literature S Ananiadou, S Pyysalo, J Tsujii, DB Kell Trends in biotechnology 28 (7), 381-390, 2010 | 266 | 2010 |
| Attending to characters in neural sequence labeling models M Rei, GKO Crichton, S Pyysalo arXiv preprint arXiv:1611.04361, 2016 | 260 | 2016 |
| Universal Dependencies 1.2 J Nivre, Ž Agić, MJ Aranzabe, M Asahara, A Atutxa, M Ballesteros, J Bauer, ... Universal Dependencies Consortium, 2015 | 250 | 2015 |
| Event extraction across multiple levels of biological organization S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii, S Ananiadou Bioinformatics 28 (18), i575-i581, 2012 | 180 | 2012 |
| Complex event extraction at PubMed scale J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski Bioinformatics 26 (12), i382-i390, 2010 | 159 | 2010 |
Filip GinterUniversity of Turku確認したメール アドレス: utu.fi
