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Haitham Ashoor
Haitham Ashoor
Principal Scientist at Takeda
Verified email at kaust.edu.sa
Title
Cited by
Cited by
Year
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
5422017
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
M Aranda, Y Li, YJ Liew, S Baumgarten, O Simakov, MC Wilson, J Piel, ...
Scientific reports 6 (1), 39734, 2016
3352016
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
2512016
DDR: efficient computational method to predict drug–target interactions using graph mining and machine learning approaches
RS Olayan, H Ashoor, VB Bajic
Bioinformatics 34 (7), 1164-1173, 2018
1982018
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques
MA Thafar, RS Olayan, H Ashoor, S Albaradei, VB Bajic, X Gao, ...
Journal of Cheminformatics 12, 1-17, 2020
942020
Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data
H Ashoor, X Chen, W Rosikiewicz, J Wang, A Cheng, P Wang, Y Ruan, ...
Nature communications 11 (1), 1173, 2020
612020
DENdb: database of integrated human enhancers
H Ashoor, D Kleftogiannis, A Radovanovic, VB Bajic
Database 2015, bav085, 2015
572015
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
H Ashoor, A Herault, A Kamoun, F Radvanyi, VB Bajic, E Barillot, V Boeva
Bioinformatics 29 (23), 2979-2986, 2013
552013
A novel method for improved accuracy of transcription factor binding site prediction
AM Khamis, O Motwalli, R Oliva, BR Jankovic, YA Medvedeva, H Ashoor, ...
Nucleic acids research 46 (12), e72-e72, 2018
392018
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts
T Alam, M Uludag, M Essack, A Salhi, H Ashoor, JB Hanks, C Kapfer, ...
Nucleic acids research 45 (5), 2838-2848, 2017
392017
Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants
A Magana-Mora, H Ashoor, BR Jankovic, A Kamau, K Awara, ...
Bioinformatics 29 (1), 117-118, 2013
192013
HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics
H Ashoor, C Louis-Brennetot, I Janoueix-Lerosey, VB Bajic, V Boeva
Nucleic acids research 45 (8), e58-e58, 2017
132017
Recognition of translation initiation sites in Arabidopsis thaliana
H Ashoor, AM Mora, K Awara, BR Jankovic, R Chowdhary, JAC Archer, ...
Systemic approaches in bioinformatics and computational systems biology …, 2012
122012
Computational drug-target interaction prediction based on graph embedding and graph mining
MA Thafar, S Albaradie, RS Olayan, H Ashoor, M Essack, VB Bajic
Proceedings of the 2020 10th international conference on bioscience …, 2020
82020
Plasma protein biomarkers for early prediction of lung cancer
MPA Davies, T Sato, H Ashoor, L Hou, T Liloglou, R Yang, JK Field
EBioMedicine 93, 2023
72023
epihet for intra-tumoral epigenetic heterogeneity analysis and visualization
X Chen, H Ashoor, R Musich, J Wang, M Zhang, C Zhang, M Lu, S Li
Scientific Reports 11 (1), 376, 2021
62021
Aströ m
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor
G., Babina, M., Bertin, N., Burroughs, AM, et al, 872-878, 2017
52017
TELS: a novel computational framework for identifying motif signatures of transcribed enhancers
D Kleftogiannis, H Ashoor, VB Bajic
Genomics, Proteomics and Bioinformatics 16 (5), 332-341, 2018
42018
Genome informatics
AK Kesarwani, A Malhotra, A Srivastava, G Ananda, H Ashoor, P Kumar, ...
Academic Press, 2019
22019
Discovery of prognostic and treatment predictive biomarkers in recently diagnosed type 1 diabetes patients treated with anti TNF-alpha
S Kostense, J Klap, H Ashoor, R Yang, GJ Weverling, K Sweet, MR Rigby, ...
medRxiv, 2023.05. 29.23290668, 2023
2023
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Articles 1–20