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Lukas M. Weber
Lukas M. Weber
Assistant Professor, Department of Biostatistics, Boston University
Verified email at bu.edu - Homepage
Title
Cited by
Cited by
Year
High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy
C Krieg, M Nowicka, S Guglietta, S Schindler, FJ Hartmann, LM Weber, ...
Nature medicine 24 (2), 144-153, 2018
7032018
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
KR Maynard, L Collado-Torres, LM Weber, C Uytingco, BK Barry, ...
Nature neuroscience 24 (3), 425-436, 2021
6142021
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
M Nowicka, C Krieg, HL Crowell, LM Weber, FJ Hartmann, S Guglietta, ...
F1000Research 6, 2017
4742017
Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data
LM Weber, MD Robinson
Cytometry Part A 89 (12), 1084-1096, 2016
3902016
Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes
A Burger, H Lindsay, A Felker, C Hess, C Anders, E Chiavacci, J Zaugg, ...
Development 143 (11), 2025-2037, 2016
3192016
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering
LM Weber, M Nowicka, C Soneson, MD Robinson
Communications biology 2 (1), 183, 2019
2012019
Essential guidelines for computational method benchmarking
LM Weber, W Saelens, R Cannoodt, C Soneson, A Hapfelmeier, ...
Genome biology 20, 1-12, 2019
1502019
Statistical methods for detecting differentially methylated loci and regions
MD Robinson, A Kahraman, CW Law, H Lindsay, M Nowicka, LM Weber, ...
Frontiers in genetics 5, 324, 2014
1382014
High-dimensional single-cell analysis reveals the immune signature of narcolepsy
FJ Hartmann, R Bernard-Valnet, C Quériault, D Mrdjen, LM Weber, E Galli, ...
Journal of experimental medicine 213 (12), 2621-2633, 2016
1162016
Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis
ME Shaul, O Eyal, S Guglietta, P Aloni, A Zlotnik, E Forkosh, L Levy, ...
The FASEB Journal 34 (3), 4204-4218, 2020
892020
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
B Pardo, A Spangler, LM Weber, SC Page, SC Hicks, AE Jaffe, ...
BMC genomics 23 (1), 434, 2022
832022
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor
D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ...
Bioinformatics 38 (11), 3128-3131, 2022
832022
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
AA Hippen, MM Falco, LM Weber, EP Erkan, K Zhang, JA Doherty, ...
PLoS computational biology 17 (8), e1009290, 2021
622021
An updated guide for the perplexed: cytometry in the high-dimensional era
T Liechti, LM Weber, TM Ashhurst, N Stanley, M Prlic, S Van Gassen, ...
Nature Immunology 22 (10), 1190-1197, 2021
592021
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes
LM Weber, A Saha, A Datta, KD Hansen, SC Hicks
Nature communications 14 (1), 4059, 2023
282023
Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
LM Weber, AA Hippen, PF Hickey, KC Berrett, J Gertz, JA Doherty, ...
Gigascience 10 (9), giab062, 2021
282021
HDCytoData: collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
LM Weber, C Soneson
F1000Research 8, 2019
202019
VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data
M Tippani, HR Divecha, JL Catallini, SH Kwon, LM Weber, A Spangler, ...
Biological Imaging 3, e23, 2023
19*2023
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing
M Petrillo, M Fabbri, DM Kagkli, M Querci, G Van den Eede, E Alm, ...
F1000Research 10, 2021
122021
Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors
AA Hippen, DK Omran, LM Weber, E Jung, R Drapkin, JA Doherty, ...
Genome biology 24 (1), 239, 2023
11*2023
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Articles 1–20