| A proteome-scale map of the human interactome network T Rolland, M Taşan, B Charloteaux, SJ Pevzner, Q Zhong, N Sahni, S Yi, ... Cell 159 (5), 1212-1226, 2014 | 1499 | 2014 |
| Independently evolved virulence effectors converge onto hubs in a plant immune system network MS Mukhtar, AR Carvunis, M Dreze, P Epple, J Steinbrenner, J Moore, ... science 333 (6042), 596-601, 2011 | 912 | 2011 |
| Proto-genes and de novo gene birth AR Carvunis, T Rolland, I Wapinski, MA Calderwood, MA Yildirim, ... Nature 487 (7407), 370-374, 2012 | 662 | 2012 |
| Integrative approaches for finding modular structure in biological networks K Mitra, AR Carvunis, SK Ramesh, T Ideker Nature Reviews Genetics 14 (10), 719-732, 2013 | 610 | 2013 |
| Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant, MA Calderwood, ... Nature 487 (7408), 491-495, 2012 | 429 | 2012 |
| Literature-curated protein interaction datasets ME Cusick, H Yu, A Smolyar, K Venkatesan, AR Carvunis, N Simonis, ... Nature methods 6 (1), 39-46, 2009 | 371 | 2009 |
| Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans D Dupuy, N Bertin, CA Hidalgo, K Venkatesan, D Tu, D Lee, J Rosenberg, ... Nature biotechnology 25 (6), 663-668, 2007 | 363 | 2007 |
| Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network N Simonis, JF Rual, AR Carvunis, M Tasan, I Lemmens, ... Nature methods 6 (1), 47-54, 2009 | 344 | 2009 |
| Evidence for Network Evolution in an Arabidopsis Interactome Map Arabidopsis Interactome Mapping Consortium, M Dreze, AR Carvunis, ... Science 333 (6042), 601-607, 2011 | 295 | 2011 |
| De novo gene birth SB Van Oss, AR Carvunis PLoS genetics 15 (5), e1008160, 2019 | 283 | 2019 |
| Genome-Wide Identification of Pseudomonas aeruginosa Virulence-Related Genes Using a Caenorhabditis elegans Infection Model RL Feinbaum, JM Urbach, NT Liberati, S Djonovic, A Adonizio, ... PLoS pathogens 8 (7), e1002813, 2012 | 195 | 2012 |
| Standardized annotation of translated open reading frames JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ... Nature biotechnology 40 (7), 994-999, 2022 | 165* | 2022 |
| Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes N Vakirlis, AR Carvunis, A McLysaght elife 9, e53500, 2020 | 124 | 2020 |
| De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences N Vakirlis, O Acar, B Hsu, N Castilho Coelho, SB Van Oss, A Wacholder, ... Nature communications 11 (1), 781, 2020 | 111 | 2020 |
| Quantitative translation of dog-to-human aging by conserved remodeling of the DNA methylome T Wang, J Ma, AN Hogan, S Fong, K Licon, B Tsui, JF Kreisberg, ... Cell systems 11 (2), 176-185. e6, 2020 | 105 | 2020 |
| No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution T Domazet-Lošo, AR Carvunis, MM Albā, MS Šestak, R Bakarić, R Neme, ... Molecular biology and evolution 34 (4), 843-856, 2017 | 90 | 2017 |
| Mapping transcription factor interactome networks using HaloTag protein arrays J Yazaki, M Galli, AY Kim, K Nito, F Aleman, KN Chang, AR Carvunis, ... Proceedings of the National Academy of Sciences 113 (29), E4238-E4247, 2016 | 83 | 2016 |
| The meanings of'function'in biology and the problematic case of de novo gene emergence DM Keeling, P Garza, CM Nartey, AR Carvunis Elife 8, e47014, 2019 | 69 | 2019 |
| Revisiting the Saccharomyces cerevisiae predicted ORFeome QR Li, AR Carvunis, H Yu, JDJ Han, Q Zhong, N Simonis, S Tam, T Hao, ... Genome research 18 (8), 1294-1303, 2008 | 38 | 2008 |
| Evidence for a common evolutionary rate in metazoan transcriptional networks AR Carvunis, T Wang, D Skola, A Yu, J Chen, JF Kreisberg, T Ideker Elife 4, e11615, 2015 | 36 | 2015 |
