Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi, L Rundo, G Mauri, ... Applied Soft Computing 81, 105494, 2019 | 54 | 2019 |
Simpful: a user-friendly python library for fuzzy logic S Spolaor, C Fuchs, P Cazzaniga, U Kaymak, D Besozzi, MS Nobile International Journal of Computational Intelligence Systems 13 (1), 1687-1698, 2020 | 47 | 2020 |
Computational intelligence for parameter estimation of biochemical systems MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ... 2018 IEEE congress on evolutionary computation (CEC), 1-8, 2018 | 46 | 2018 |
GenHap: a novel computational method based on genetic algorithms for haplotype assembly A Tangherloni, S Spolaor, L Rundo, MS Nobile, P Cazzaniga, G Mauri, ... BMC bioinformatics 20, 1-14, 2019 | 34 | 2019 |
pyFUME: a Python package for fuzzy model estimation C Fuchs, S Spolaor, MS Nobile, U Kaymak 2020 IEEE international conference on fuzzy systems (FUZZ-IEEE), 1-8, 2020 | 26 | 2020 |
A swarm intelligence approach to avoid local optima in fuzzy c-means clustering C Fuchs, S Spolaor, MS Nobile, U Kaymak 2019 IEEE international conference on fuzzy systems (FUZZ-IEEE), 1-6, 2019 | 24 | 2019 |
Coupling mechanistic approaches and fuzzy logic to model and simulate complex systems S Spolaor, MS Nobile, G Mauri, P Cazzaniga, D Besozzi IEEE Transactions on Fuzzy Systems 28 (8), 1748-1759, 2019 | 20 | 2019 |
Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems S Spolaor, A Tangherloni, L Rundo, MS Nobile, P Cazzaniga 2017 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2017 | 20 | 2017 |
Efficient Simulation of Reaction Systems on Graphics Processing Units. MS Nobile, AE Porreca, S Spolaor, L Manzoni, P Cazzaniga, G Mauri, ... Fundam. Informaticae 154 (1-4), 307-321, 2017 | 19 | 2017 |
Surfing on fitness landscapes: A boost on optimization by Fourier surrogate modeling L Manzoni, DM Papetti, P Cazzaniga, S Spolaor, G Mauri, D Besozzi, ... Entropy 22 (3), 285, 2020 | 16 | 2020 |
A graph theory approach to fuzzy rule base simplification C Fuchs, S Spolaor, MS Nobile, U Kaymak International conference on information processing and management of …, 2020 | 15 | 2020 |
Modeling cell proliferation in human acute myeloid leukemia xenografts MS Nobile, T Vlachou, S Spolaor, D Bossi, P Cazzaniga, L Lanfrancone, ... Bioinformatics 35 (18), 3378-3386, 2019 | 15 | 2019 |
Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells MS Nobile, G Votta, R Palorini, S Spolaor, H De Vitto, P Cazzaniga, ... Bioinformatics 36 (7), 2181-2188, 2020 | 14 | 2020 |
Towards human cell simulation S Spolaor, M Gribaudo, M Iacono, T Kadavy, Z Komínková Oplatková, ... High-performance modelling and simulation for big data applications …, 2019 | 13 | 2019 |
SMGen: a generator of synthetic models of biochemical reaction networks SG Riva, P Cazzaniga, MS Nobile, S Spolaor, L Rundo, D Besozzi, ... Symmetry 14 (1), 119, 2022 | 10 | 2022 |
GPU-powered multi-swarm parameter estimation of biological systems: A master-slave approach A Tangherloni, L Rundo, S Spolaor, P Cazzaniga, MS Nobile 2018 26th Euromicro International Conference on Parallel, Distributed and …, 2018 | 10 | 2018 |
ACDC: Automated cell detection and counting for time-lapse fluorescence microscopy L Rundo, A Tangherloni, DR Tyson, R Betta, C Militello, S Spolaor, ... Applied Sciences 10 (18), 6187, 2020 | 9 | 2020 |
Computational intelligence for life sciences D Besozzi, L Manzoni, MS Nobile, S Spolaor, M Castelli, L Vanneschi, ... Fundamenta Informaticae 171 (1-4), 57-80, 2020 | 8 | 2020 |
High performance computing for haplotyping: models and platforms A Tangherloni, L Rundo, S Spolaor, MS Nobile, I Merelli, D Besozzi, ... Euro-Par 2018: Parallel Processing Workshops: Euro-Par 2018 International …, 2019 | 8 | 2019 |
The impact of representation on the optimization of marker panels for single-cell RNA data A Tangherloni, SG Riva, S Spolaor, D Besozzi, MS Nobile, P Cazzaniga 2021 IEEE Congress on Evolutionary Computation (CEC), 1423-1430, 2021 | 7 | 2021 |