Emanuele Raineri
Emanuele Raineri
Staff Scientist, Centro Nacional de Analis Genomica
Verified email at
Cited by
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Fast computation and applications of genome mappability
T Derrien, J Estellé, S Marco Sola, DG Knowles, E Raineri, R Guigó, ...
PloS one 7 (1), e30377, 2012
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
Evolvability and hierarchy in rewired bacterial gene networks
M Isalan, C Lemerle, K Michalodimitrakis, C Horn, P Beltrao, E Raineri, ...
Nature 452 (7189), 840-845, 2008
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ...
science 326 (5957), 1263-1268, 2009
Modelling and simulating generic RNA-Seq experiments with the flux simulator
T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth
Nucleic acids research 40 (20), 10073-10083, 2012
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ...
Nature communications 6 (1), 1-13, 2015
Whole-genome fingerprint of the DNA methylome during human B cell differentiation
M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler, G Castellano, ...
Nature genetics 47 (7), 746-756, 2015
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
X Agirre, G Castellano, M Pascual, S Heath, M Kulis, V Segura, ...
Genome research 25 (4), 478-487, 2015
Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage
AC Queiros, R Beekman, R Vilarrasa-Blasi, M Duran-Ferrer, G Clot, ...
Cancer cell 30 (5), 806-821, 2016
SNP calling by sequencing pooled samples
E Raineri, L Ferretti, A Esteve-Codina, B Nevado, S Heath, ...
BMC bioinformatics 13, 1-8, 2012
The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild
J Prado-Martinez, I Hernando-Herraez, B Lorente-Galdos, M Dabad, ...
BMC genomics 14, 1-8, 2013
Distinct trends of DNA methylation patterning in the innate and adaptive immune systems
RP Schuyler, A Merkel, E Raineri, L Altucci, E Vellenga, JHA Martens, ...
Cell reports 17 (8), 2101-2111, 2016
A novel translational control mechanism involving RNA structures within coding sequences
J Jungfleisch, DD Nedialkova, I Dotu, KE Sloan, N Martinez-Bosch, ...
Genome research 27 (1), 95-106, 2017
Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs
A Esteve-Codina, Y Paudel, L Ferretti, E Raineri, HJ Megens, L Silió, ...
BMC genomics 14, 1-14, 2013
Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
I Hernandez, H Dhiman, G Klanert, V Jadhav, N Auer, M Hanscho, ...
Biotechnology and Bioengineering 116 (3), 677-692, 2019
Neutrality Tests for Sequences with Missing Data
L Ferretti, E Raineri, S Ramos-Onsins
Genetics, 2012
Electromagnetism and gauge theory on the permutation group S3
S Majid, E Raineri
Journal of Geometry and Physics 44 (2-3), 129-155, 2002
Faster exact Markovian probability functions for motif occurrences: a DFA-only approach
P Ribeca, E Raineri
Bioinformatics 24 (24), 2839-2848, 2008
A note on exact differences between beta distributions in genomic (Methylation) studies
E Raineri, M Dabad, S Heath
PLoS One 9 (5), e97349, 2014
BlastR—fast and accurate database searches for non-coding RNAs
G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ...
Nucleic acids research 39 (16), 6886-6895, 2011
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