Daron M Standley
Daron M Standley
Professor, Osaka University
Verified email at biken.osaka-u.ac.jp - Homepage
TitleCited byYear
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
K Katoh, DM Standley
Molecular biology and evolution 30 (4), 772-780, 2013
125202013
The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection
T Satoh, O Takeuchi, A Vandenbon, K Yasuda, Y Tanaka, Y Kumagai, ...
Nature immunology 11 (10), 936, 2010
8162010
Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay
K Matsushita, O Takeuchi, DM Standley, Y Kumagai, T Kawagoe, ...
Nature 458 (7242), 1185-1190, 2009
4332009
MAFFT: iterative refinement and additional methods
K Katoh, DM Standley
Multiple sequence alignment methods, 131-146, 2014
2372014
A single polymorphic amino acid on Toxoplasma gondii kinase ROP16 determines the direct and strain-specific activation of Stat3
M Yamamoto, DM Standley, S Takashima, H Saiga, M Okuyama, ...
Journal of Experimental Medicine 206 (12), 2747-2760, 2009
2152009
A mutation in the immunoproteasome subunit PSMB8 causes autoinflammation and lipodystrophy in humans
A Kitamura, Y Maekawa, H Uehara, K Izumi, I Kawachi, M Nishizawa, ...
The Journal of clinical investigation 121 (10), 4150-4160, 2011
2072011
Malt1-Induced Cleavage of Regnase-1 in CD4+ Helper T Cells Regulates Immune Activation
T Uehata, H Iwasaki, A Vandenbon, K Matsushita, E Hernandez-Cuellar, ...
Cell 153 (5), 1036-1049, 2013
1922013
The IκB kinase complex regulates the stability of cytokine-encoding mRNA induced by TLR–IL-1R by controlling degradation of regnase-1
H Iwasaki, O Takeuchi, S Teraguchi, K Matsushita, T Uehata, K Kuniyoshi, ...
Nature immunology 12 (12), 1167, 2011
1802011
Regnase-1 and roquin regulate a common element in inflammatory mRNAs by spatiotemporally distinct mechanisms
T Mino, Y Murakawa, A Fukao, A Vandenbon, HH Wessels, D Ori, ...
Cell 161 (5), 1058-1073, 2015
1692015
A simple method to control over-alignment in the MAFFT multiple sequence alignment program
K Katoh, DM Standley
Bioinformatics 32 (13), 1933-1942, 2016
1622016
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1272011
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ...
Nucleic acids research 40 (D1), D453-D460, 2012
1172012
Outcome of a workshop on applications of protein models in biomedical research
T Schwede, A Sali, B Honig, M Levitt, HM Berman, D Jones, SE Brenner, ...
Structure 17 (2), 151-159, 2009
1162009
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results
S Liang, D Zheng, DM Standley, B Yao, M Zacharias, C Zhang
BMC bioinformatics 11 (1), 381, 2010
1082010
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
902013
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
852014
Blockade of TLR3 protects mice from lethal radiation-induced gastrointestinal syndrome
N Takemura, T Kawasaki, J Kunisawa, S Sato, A Lamichhane, ...
Nature communications 5 (1), 1-15, 2014
852014
Prediction of protein tertiary structure to low resolution: performance for a large and structurally diverse test set
VA Eyrich, DM Standley, RA Friesner
Journal of Molecular Biology 288 (4), 725-742, 1999
721999
Protein tertiary structure prediction using a branch and bound algorithm
VA Eyrich, DM Standley, AK Felts, RA Friesner
Proteins: Structure, Function, and Bioinformatics 35 (1), 41-57, 1999
701999
Akirin2 is critical for inducing inflammatory genes by bridging IκB‐ζ and the SWI/SNF complex
S Tartey, K Matsushita, A Vandenbon, D Ori, T Imamura, T Mino, ...
The EMBO journal 33 (20), 2332-2348, 2014
542014
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