Frank Austin Nothaft

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David PattersonProfessor of Computer Science, UC BerkeleyVerified email at cs.berkeley.edu
Anthony D. JosephUniversity of California BerkeleyVerified email at eecs.berkeley.edu
Zhao ZhangECE, Rutgers UniversityVerified email at rutgers.edu
Michael FranklinLiew Family Chair of Computer Science, University of ChicagoVerified email at uchicago.edu
Mark HorowitzProfessor of Electrical Engineering and Computer ScienceVerified email at ee.stanford.edu
Christos KozyrakisStanford UniversityVerified email at stanford.edu
Benjamin C. LeeProfessor, University of PennsylvaniaVerified email at seas.upenn.edu
Krishna T. MalladiAI Systems architect, Meta PlatformsVerified email at alumni.stanford.edu
Michael LindermanAssociate Professor of Computer Science, Middlebury CollegeVerified email at middlebury.edu
Christos KozanitisInstitute of Computer Science, FORTH, GreeceVerified email at ics.forth.gr
Uri LasersonGinkgo BioworksVerified email at ginkgobioworks.com
Jeff HammerbacherPrincipal Investigator at Hammer LabVerified email at hammerlab.org
Arun AhujaGoogle Deepmind, Mount Sinai School of Medicine, Northwestern UniversityVerified email at google.com
Qijing Jenny HuangUniversity of California, BerkeleyVerified email at berkeley.edu
Krste AsanovicUC BerkeleyVerified email at berkeley.edu
Sagar Karandikar(incoming) Assistant Professor in EECS, UC BerkeleyVerified email at eecs.berkeley.edu
David Bruns-SmithUC BerkeleyVerified email at berkeley.edu
Lisa Wu WillsClare Boothe Luce Assistant Professor of Computer Science and ECE, Duke UniversityVerified email at cs.duke.edu
Benedict PatenProfessor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaVerified email at ucsc.edu
Mark DiekhansUniversity of California, Santa Cruz; UC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu

Frank Austin Nothaft

Founder, Translating Science PBC

Verified email at alumni.stanford.edu - Homepage

Bioinformatics Computer Systems Hardware Computational Biology


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Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017	1098	2017
Towards energy-proportional datacenter memory with mobile DRAM KT Malladi, BC Lee, FA Nothaft, C Kozyrakis, K Periyathambi, M Horowitz Proceedings of the 39th International Symposium on Computer Architecture, 37-48, 2012	355	2012
ADAM: Genomics Formats and Processing Patterns for Cloud Scale Computing M Massie, F Nothaft, C Hartl, C Kozanitis, A Schumacher, AD Joseph, ... Technical Report UCB/EECS-2013-207, EECS Department, University of …, 2013	141	2013
Rethinking data-intensive science using scalable analytics systems FA Nothaft, M Massie, T Danford, Z Zhang, U Laserson, C Yeksigian, ... Proceedings of the 2015 ACM SIGMOD International Conference on Management of …, 2015	126	2015
Scientific computing meets big data technology: An astronomy use case Z Zhang, K Barbary, FA Nothaft, E Sparks, O Zahn, MJ Franklin, ... 2015 IEEE International Conference on Big Data (Big Data), 918-927, 2015	77	2015
FPGA Accelerated INDEL Realignment in the Cloud L Wu, D Bruns-Smith, FA Nothaft, Q Huang, S Karandikar, J Le, A Lin, ... 2019 IEEE International Symposium on High Performance Computer Architecture …, 2019	47	2019
Kira: Processing Astronomy Imagery Using Big Data Technology Z Zhang, K Barbary, FA Nothaft, ER Sparks, O Zahn, MJ Franklin, ... IEEE Transactions on Big Data, 2016	41	2016
The NIH BD2K center for big data in translational genomics B Paten, M Diekhans, BJ Druker, S Friend, J Guinney, N Gassner, ... Journal of the American Medical Informatics Association 22 (6), 1143-1147, 2015	38	2015
Pragma-based floating-to-fixed point conversion for the emulation of analog behavioral models FA Nothaft, L Fernandez, S Cefali, N Shah, J Rael, L Darnell Proceedings of the 2014 IEEE/ACM International Conference on Computer-Aided …, 2014	24	2014
Scalable Genome Resequencing with ADAM and avocado F Nothaft Univ. California, Berkeley, CA, USA, Tech. Rep. UCB/EECS-2015–65, 2015	11	2015
Scalable Systems and Algorithms for Genomic Variant Analysis FA Nothaft UC Berkeley, 2017	8	2017
Mango: Exploratory Data Analysis for Large-Scale Sequencing Datasets AK Morrow, GZ He, FA Nothaft, ET Tu, J Paschall, N Yosef, AD Joseph Cell Systems 9 (6), 609-613. e3, 2019	7*	2019
DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark MD Linderman, D Chia, F Wallace, FA Nothaft BMC bioinformatics 20, 1-8, 2019	4	2019

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