| The medaka draft genome and insights into vertebrate genome evolution M Kasahara, K Naruse, S Sasaki, Y Nakatani, W Qu, B Ahsan, T Yamada, ... Nature 447 (7145), 714-719, 2007 | 1224 | 2007 |
| The medaka draft genome and insights into vertebrate genome evolution M Kasahara, K Naruse, S Sasaki, Y Nakatani, W Qu, B Ahsan, T Yamada, ... Nature 447 (7145), 714-719, 2007 | 1224 | 2007 |
| The genome of a lepidopteran model insect, the silkworm Bombyx mori International Silkworm Genome Consortium Insect biochemistry and molecular biology 38 (12), 1036-1045, 2008 | 708 | 2008 |
| Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates Y Nakatani, H Takeda, Y Kohara, S Morishita Genome research 17 (9), 1254-1265, 2007 | 541 | 2007 |
| High-dimensional and large-scale phenotyping of yeast mutants Y Ohya, J Sese, M Yukawa, F Sano, Y Nakatani, TL Saito, A Saka, ... Proceedings of the National Academy of Sciences of the United States of …, 2005 | 337 | 2005 |
| Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites S Sasaki, CC Mello, A Shimada, Y Nakatani, S Hashimoto, M Ogawa, ... Science 323 (5912), 401-404, 2009 | 144 | 2009 |
| Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution Y Nakatani, P Shingate, V Ravi, NE Pillai, A Prasad, A McLysaght, ... Nature Communications 12 (1), 4489, 2021 | 106 | 2021 |
| Comprehensive genomic profiling of neuroendocrine carcinomas of the gastrointestinal system S Yachida, Y Totoki, M Noë, Y Nakatani, M Horie, K Kawasaki, ... Cancer discovery 12 (3), 692-711, 2022 | 100 | 2022 |
| Genome-wide profiling of DNA methylation in human cancer cells K Ogoshi, S Hashimoto, Y Nakatani, W Qu, K Oshima, K Tokunaga, ... Genomics 98 (4), 280-287, 2011 | 69 | 2011 |
| High-resolution analysis of the 5′-end transcriptome using a next generation DNA sequencer S Hashimoto, W Qu, B Ahsan, K Ogoshi, A Sasaki, Y Nakatani, Y Lee, ... PLoS One 4 (1), e4108, 2009 | 60 | 2009 |
| Coordinated changes in DNA methylation in antigen-specific memory CD4 T cells S Hashimoto, K Ogoshi, A Sasaki, J Abe, W Qu, Y Nakatani, B Ahsan, ... The Journal of Immunology 190 (8), 4076-4091, 2013 | 55 | 2013 |
| Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns W Qu, S Hashimoto, A Shimada, Y Nakatani, K Ichikawa, TL Saito, ... Genome research 22 (8), 1419-1425, 2012 | 52 | 2012 |
| CTCF looping is established during gastrulation in medaka embryos R Nakamura, Y Motai, M Kumagai, CL Wike, H Nishiyama, Y Nakatani, ... Genome Research 31 (6), 968-980, 2021 | 50 | 2021 |
| UTGB/medaka: genomic resource database for medaka biology B Ahsan, D Kobayashi, T Yamada, M Kasahara, S Sasaki, TL Saito, ... Nucleic acids research 36 (suppl_1), D747-D752, 2007 | 39 | 2007 |
| Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects Y Nakatani, A McLysaght Proceedings of the National Academy of Sciences 116 (6), 1816-1818, 2019 | 29 | 2019 |
| Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes Y Nakatani, A McLysaght Bioinformatics 33 (14), i369-i378, 2017 | 29 | 2017 |
| Diversity of Ca2+-induced morphology revealed by morphological phenotyping of Ca2+-sensitive mutants of Saccharomyces cerevisiae S Ohnuki, S Nogami, H Kanai, D Hirata, Y Nakatani, S Morishita, Y Ohya Eukaryotic cell 6 (5), 817-830, 2007 | 28 | 2007 |
| Data mining tools for the Saccharomyces cerevisiae morphological database TL Saito, J Sese, Y Nakatani, F Sano, M Yukawa, Y Ohya, S Morishita Nucleic acids research 33 (suppl_2), W753-W757, 2005 | 23 | 2005 |
| An integrative epigenomic approach identifies ELF3 as an oncogenic regulator in ASCL1‐positive neuroendocrine carcinoma M Horie, H Tanaka, M Suzuki, Y Sato, S Takata, E Takai, N Miyashita, ... Cancer Science 114 (6), 2596, 2023 | 11 | 2023 |
| Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species Y Nakatani, CC Mello, S Hashimoto, A Shimada, R Nakamura, ... BMC genomics 16 (1), 978, 2015 | 4 | 2015 |
