Scott Gigante
Scott Gigante
Founding Engineer, CTVC
Verified email at
Cited by
Cited by
Visualizing structure and transitions in high-dimensional biological data
KR Moon, D Van Dijk, Z Wang, S Gigante, DB Burkhardt, WS Chen, K Yim, ...
Nature biotechnology 37 (12), 1482-1492, 2019
Enhancing experimental signals in single-cell RNA-sequencing data using graph signal processing
DB Burkhardt, JS Stanley III, AL Perdigoto, SA Gigante, KC Herold, G Wolf, ...
Using long-read sequencing to detect imprinted DNA methylation
S Gigante, Q Gouil, A Lucattini, A Keniry, T Beck, M Tinning, L Gordon, ...
Nucleic acids research 47 (8), e46-e46, 2019
Multiscale PHATE identifies multimodal signatures of COVID-19
M Kuchroo, J Huang, P Wong, JC Grenier, D Shung, A Tong, C Lucas, ...
Nature biotechnology 40 (5), 681-691, 2022
Visualizing the phate of neural networks
S Gigante, AS Charles, S Krishnaswamy, G Mishne
Advances in neural information processing systems 32, 2019
Single-cell analysis reveals inflammatory interactions driving macular degeneration
M Kuchroo, M DiStasio, E Song, E Calapkulu, L Zhang, M Ige, AH Sheth, ...
Nature Communications 14 (1), 2589, 2023
Harmonic alignment
JS Stanley III, S Gigante, G Wolf, S Krishnaswamy
Proceedings of the 2020 SIAM International Conference on Data Mining, 316-324, 2020
Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality
S Gigante
F1000Research 6, 227, 2017
An environmentally responsive transcriptional state modulates cell identities during root development
M Oliva, T Stuart, D Tang, J Pflueger, D Poppe, JS Jabbari, S Gigante, ...
bioRxiv, 2022.03. 04.483008, 2022
Integrated transcriptome and trajectory analysis of cutaneous T-cell lymphoma identifies putative precancer populations
J Ren, R Qu, NT Rahman, JM Lewis, ALO King, X Liao, FN Mirza, ...
Blood Advances 7 (3), 445-457, 2023
Topological analysis of single-cell data reveals shared glial landscape of macular degeneration and neurodegenerative diseases
M Kuchroo, M DiStasio, E Calapkulu, M Ige, L Zhang, AH Sheth, M Menon, ...
Biorxiv, 2021.01. 19.427286, 2021
Compressed diffusion
S Gigante, JS Stanley, N Vu, D van Dijk, KR Moon, G Wolf, ...
2019 13th International conference on Sampling Theory and Applications …, 2019
Modeling global dynamics from local snapshots with deep generative neural networks
S Gigante, D van Dijk, KR Moon, A Strzalkowski, G Wolf, S Krishnaswamy
2019 13th International conference on Sampling Theory and Applications …, 2019
Manifold alignment with feature correspondence
JS Stanley III, G Wolf, S Krishnaswamy
arXiv preprint arXiv:1810.00386, 2019
In-house training of the nanonet local basecaller: opportunities and challenges
S Gigante
Oxford Nanopore Technologies, 2017
Dataset 1 in: Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality. F1000Research. 2017
S Gigante
Data Source, 0
SystemMatch: optimizing preclinical drug models to human clinical outcomes via generative latent-space matching
S Gigante, VG Raghavan, AM Robinson, RA Barton, AH Rahman, ...
arXiv preprint arXiv:2205.07110, 2022
Diffusion-based Approaches to Visualization and Exploration of High-Dimensional Data
SA Gigante
Yale University, 2021
Defining and benchmarking open problems in single-cell analysis
MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ...
Research Square, 2024
Topological analysis of single-cell hierarchy reveals inflammatory glial landscape of macular degeneration
BP Hafler, M Kuchroo, M DiStasio, E Song, L Zhang, M Ige, A Sheth, ...
Investigative Ophthalmology & Visual Science 63 (7), 2314-2314, 2022
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