| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 1250 | 2017 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 565 | 2020 |
| An integrated framework advancing membrane protein modeling and design RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ... PLoS computational biology 11 (9), e1004398, 2015 | 169 | 2015 |
| Robust classification of protein variation using structural modelling and large-scale data integration EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ... Nucleic acids research 44 (6), 2501-2513, 2016 | 71 | 2016 |
| Protein structure prediction and design in a biologically realistic implicit membrane RF Alford, PJ Fleming, KG Fleming, JJ Gray Biophysical journal 118 (8), 2042-2055, 2020 | 57 | 2020 |
| A humanized yeast system to analyze cleavage of prelamin A by ZMPSTE24 ED Spear, RF Alford, TD Babatz, KM Wood, OW Mossberg, ... Methods 157, 47-55, 2019 | 19 | 2019 |
| Protein docking and steered molecular dynamics suggest alternative phospholamban-binding sites on the SERCA calcium transporter RF Alford, N Smolin, HS Young, JJ Gray, SL Robia Journal of Biological Chemistry 295 (32), 11262-11274, 2020 | 17 | 2020 |
| Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks J Koehler Leman, S Lyskov, SM Lewis, J Adolf-Bryfogle, RF Alford, ... Nature communications 12 (1), 6947, 2021 | 15 | 2021 |
| A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design RF Alford, A Leaver-Fay, L Gonzales, EL Dolan, JJ Gray PLoS computational biology 13 (12), e1005837, 2017 | 14 | 2017 |
| PyRosetta Jupyter notebooks teach biomolecular structure prediction and design KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ... The Biophysicist 2 (1), 108-122, 2021 | 13 | 2021 |
| Membrane protein engineering with rosetta RF Alford, JJ Gray Computational Design of Membrane Proteins, 43-57, 2021 | 5 | 2021 |
| Diverse scientific benchmarks for implicit membrane energy functions RF Alford, R Samanta, JJ Gray Journal of chemical theory and computation 17 (8), 5248-5261, 2021 | 3 | 2021 |
| Correction to “the rosetta all-atom energy function for macromolecular modeling and design” RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 18 (7), 4594-4594, 2022 | 2 | 2022 |
| Rosetta-MPDock: a novel computational tool for protein-protein docking within the membrane bilayer JK Leman, RF Alford, JJ Gray Biophysical Journal 108 (2), 250a, 2015 | 2 | 2015 |
| EGGNet, a generalizable geometric deep learning framework for protein complex pose scoring Z Wang, R Brand, J Adolf-Bryfogle, J Grewal, Y Qi, SA Combs, ... ACS omega, 2024 | | 2024 |
| Toward biologically realistic computational membrane protein structure prediction and design RF Alford The Johns Hopkins University, 2020 | | 2020 |
