| Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities PD Schloss, SL Westcott, T Ryabin, JR Hall, M Hartmann, EB Hollister, ... Applied and environmental microbiology 75 (23), 7537-7541, 2009 | 14598 | 2009 |
| CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome research 25 (7), 1043-1055, 2015 | 2678 | 2015 |
| STAMP: statistical analysis of taxonomic and functional profiles DH Parks, GW Tyson, P Hugenholtz, RG Beiko Bioinformatics 30 (21), 3123-3124, 2014 | 1639 | 2014 |
| A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature biotechnology 36 (10), 996-1004, 2018 | 936 | 2018 |
| Identifying biologically relevant differences between metagenomic communities DH Parks, RG Beiko Bioinformatics 26 (6), 715-721, 2010 | 762 | 2010 |
| Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature microbiology 2 (11), 1533-1542, 2017 | 634 | 2017 |
| Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017 | 454 | 2017 |
| Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics PN Evans, DH Parks, GL Chadwick, SJ Robbins, VJ Orphan, SD Golding, ... Science 350 (6259), 434-438, 2015 | 432 | 2015 |
| GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database PA Chaumeil, AJ Mussig, P Hugenholtz, DH Parks Bioinformatics, 2019 | 277 | 2019 |
| Evaluation of background subtraction algorithms with post-processing DH Parks, SS Fels 2008 IEEE Fifth International Conference on Advanced Video and Signal Based …, 2008 | 269 | 2008 |
| Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota I Vanwonterghem, PN Evans, DH Parks, PD Jensen, BJ Woodcroft, ... Nature microbiology 1 (12), 1-9, 2016 | 242 | 2016 |
| GroopM: an automated tool for the recovery of population genomes from related metagenomes M Imelfort, D Parks, BJ Woodcroft, P Dennis, P Hugenholtz, GW Tyson PeerJ 2, e603, 2014 | 231 | 2014 |
| An expanded genomic representation of the phylum Cyanobacteria RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ... Genome biology and evolution 6 (5), 1031-1045, 2014 | 197 | 2014 |
| On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria RM Soo, J Hemp, DH Parks, WW Fischer, P Hugenholtz Science 355 (6332), 1436-1440, 2017 | 173 | 2017 |
| Comparative genomic analysis of the class Epsilonproteobacteria and proposed reclassification to Epsilonbacteraeota (phyl. nov.) DW Waite, I Vanwonterghem, C Rinke, DH Parks, Y Zhang, K Takai, ... Frontiers in microbiology 8, 682, 2017 | 144 | 2017 |
| GenGIS: A geospatial information system for genomic data DH Parks, M Porter, S Churcher, S Wang, C Blouin, J Whalley, S Brooks, ... Genome research 19 (10), 1896-1904, 2009 | 129 | 2009 |
| GenGIS 2: Geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework DH Parks, T Mankowski, S Zangooei, MS Porter, DG Armanini, DJ Baird, ... PloS one 8 (7), e69885, 2013 | 104 | 2013 |
| An evolving view of methane metabolism in the Archaea PN Evans, JA Boyd, AO Leu, BJ Woodcroft, DH Parks, P Hugenholtz, ... Nature Reviews Microbiology 17 (4), 219-232, 2019 | 103 | 2019 |
| Comparative genomics of candidate phylum TM6 suggests that parasitism is widespread and ancestral in this lineage YK Yeoh, Y Sekiguchi, DH Parks, P Hugenholtz Molecular biology and evolution 33 (4), 915-927, 2016 | 87* | 2016 |
| A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes NA Rahman, DH Parks, DL Willner, AL Engelbrektson, SK Goffredi, ... Microbiome 3 (1), 1-16, 2015 | 87 | 2015 |
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
