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Alexey Kazakov
Alexey Kazakov
Verified email at lbl.gov
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RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria
PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ...
BMC genomics 14, 1-12, 2013
3802013
Alpha-satellite DNA of primates: old and new families
I Alexandrov, A Kazakov, I Tumeneva, V Shepelev, Y Yurov
Chromosoma 110 (4), 253-266, 2001
2122001
Low‐molecular‐weight post‐translationally modified microcins
K Severinov, E Semenova, A Kazakov, T Kazakov, MS Gelfand
Molecular microbiology 65 (6), 1380-1394, 2007
1652007
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
PS Novichkov, DA Rodionov, ED Stavrovskaya, ES Novichkova, ...
Nucleic acids research 38 (suppl_2), W299-W307, 2010
1532010
Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex
DA Ravcheev, X Li, H Latif, K Zengler, SA Leyn, YD Korostelev, ...
Journal of bacteriology 194 (5), 1145-1157, 2012
1462012
Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria
AE Kazakov, DA Rodionov, E Alm, AP Arkin, I Dubchak, MS Gelfand
Journal of bacteriology 191 (1), 52-64, 2009
1442009
The Escherichia coli Yej Transporter Is Required for the Uptake of Translation Inhibitor Microcin C
M Novikova, A Metlitskaya, K Datsenko, T Kazakov, A Kazakov, B Wanner, ...
Journal of bacteriology 189 (22), 8361-8365, 2007
1102007
RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
AE Kazakov, MJ Cipriano, PS Novichkov, S Minovitsky, DV Vinogradov, ...
Nucleic acids research 35 (suppl_1), D407-D412, 2007
1102007
Comparative genomics of regulation of heavy metal resistance in Eubacteria
EA Permina, AE Kazakov, OV Kalinina, MS Gelfand
BMC microbiology 6, 1-11, 2006
1022006
A cosmid and cDNA fine physical map of a human chromosome 13q14 region frequently lost in B‐cell chronic lymphocytic leukemia and identification of a new putative tumor …
B Kapanadze, V Kashuba, A Baranova, O Rasool, W van Everdink, Y Liu, ...
FEBS letters 426 (2), 266-270, 1998
831998
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
DA Rodionov, PS Novichkov, ED Stavrovskaya, IA Rodionova, X Li, ...
BMC genomics 12, 1-17, 2011
772011
RegTransBase–a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
MJ Cipriano, PN Novichkov, AE Kazakov, DA Rodionov, AP Arkin, ...
BMC genomics 14, 1-8, 2013
752013
Selective carbon sources influence the end products of microbial nitrate respiration
HK Carlson, LM Lui, MN Price, AE Kazakov, AV Carr, JV Kuehl, TK Owens, ...
The ISME journal 14 (8), 2034-2045, 2020
722020
Bioinformatics classification and functional analysis of PhoH homologs
AE Kazakov, O Vassieva, MS Gelfand, A Osterman, R Overbeek
In Silico Biology 3 (1-2), 3-15, 2003
612003
Comparative genomics of the dormancy regulons in mycobacteria
A Gerasimova, AE Kazakov, AP Arkin, I Dubchak, MS Gelfand
Journal of bacteriology 193 (14), 3446-3452, 2011
602011
Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20
JV Kuehl, MN Price, J Ray, KM Wetmore, Z Esquivel, AE Kazakov, ...
MBio 5 (3), 10.1128/mbio. 01041-14, 2014
562014
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
S Carim, AL Azadeh, AE Kazakov, MN Price, PJ Walian, LM Lui, ...
The ISME journal 15 (8), 2289-2305, 2021
392021
Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH
GA Christensen, GM Zane, AE Kazakov, X Li, DA Rodionov, ...
Journal of bacteriology 197 (1), 29-39, 2015
342015
The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella
BA Adler, AE Kazakov, C Zhong, H Liu, E Kutter, LM Lui, TN Nielsen, ...
Microbiology 167 (12), 001126, 2021
322021
Comparative genomics and evolution of transcriptional regulons in Proteobacteria
SA Leyn, IA Suvorova, AE Kazakov, DA Ravcheev, VV Stepanova, ...
Microbial genomics 2 (7), e000061, 2016
302016
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Articles 1–20