hideya kawaji
hideya kawaji
RIKEN PMI
確認したメール アドレス: gsc.riken.jp
タイトル
引用先
引用先
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
33342005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
17092002
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
15402014
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626-635, 2006
13082006
A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
8462014
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8262009
Functional annotation of a full-length mouse cDNA collection
J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, ...
Nature 409 (6821), 685-689, 2001
8142001
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ...
Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003
7582003
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ...
Cell 140 (5), 744-752, 2010
6502010
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
4672017
The BioMart community portal: an innovative alternative to large, centralized data repositories
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ...
Nucleic acids research 43 (W1), W589-W598, 2015
4512015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
4202009
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16 (1), 1-14, 2015
3912015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ...
Science 347 (6225), 1010-1014, 2015
3802015
Hidden layers of human small RNAs
H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ...
BMC genomics 9 (1), 157, 2008
2932008
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ...
Molecular systems biology 11 (12), 852, 2015
2182015
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ...
Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012
2132012
A draft network of ligand–receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 6 (1), 1-12, 2015
1962015
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15 (1), 119, 2014
1762014
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
1722017
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