Yoshihiro Shimizu

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Hiroki R. UedaUniversity of Tokyo / RIKENVerified email at umin.ac.jp
Tsutomu SuzukiProfessor, Department of Chemistry and Biotechnology, University of TokyoVerified email at chembio.t.u-tokyo.ac.jp
Yukihide TomariInstitute for Quantitative Biosciences, The University of TokyoVerified email at iqb.u-tokyo.ac.jp
Bei-Wen YingUniversity of TsukubaVerified email at u.tsukuba.ac.jp
Etsuo A SusakiDepartment of Biochemistry and Systems Biomedicine, Juntendo University Graduate School of MedicineVerified email at juntendo.ac.jp
Dimitri PerrinQueensland University of TechnologyVerified email at qut.edu.au
Ryohei NarumiLaboratory of Proteome Research, National Institutes of Biomedical Innovation, Health and NutritionVerified email at nibiohn.go.jp
Hideki TaguchiTokyo Institute of TechnologyVerified email at bio.titech.ac.jp
Kozo TomitaDepartment of Computational Biology and Medical Sciences, The University of TokyoVerified email at edu.k.u-tokyo.ac.jp
Kazufumi HosodaNational Institute of Information and Communications TechnologyVerified email at nict.go.jp
Takashi FunatsuProfessor, Graduate School of Pharmaceutical Sciences, The University of TokyoVerified email at mol.f.u-tokyo.ac.jp
Natsuhisa OkaGifu UniversityVerified email at f.gifu-u.ac.jp
Yoshitsugu ShiroUniversity of HyogoVerified email at sci.u-hyogo.ac.jp
Tetsuya YomoEast China Normal UniversityVerified email at sei.ecnu.edu.cn
Shigehiro KurakuNational Institute of GeneticsVerified email at nig.ac.jp
Genshiro A. SunagawaLaboratory for Hibernation Biology, RIKEN BDRVerified email at riken.jp
Koichi ItoDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier SciencesVerified email at k.u-tokyo.ac.jp
Yukimatsu tohDept. of Biochemistry and cell biology, Rice UniversityVerified email at rice.edu
Takeshi WadaTokyo University of ScienceVerified email at rs.tus.ac.jp
Sotaro UemuraThe University of Tokyo

Yoshihiro Shimizu

RIKEN

Verified email at riken.jp - Homepage

protein synthesis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Cell-free translation reconstituted with purified components Y Shimizu, A Inoue, Y Tomari, T Suzuki, T Yokogawa, K Nishikawa, ... Nature biotechnology 19 (8), 751-755, 2001	2080	2001
Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis EA Susaki, K Tainaka, D Perrin, F Kishino, T Tawara, TM Watanabe, ... Cell 157 (3), 726-739, 2014	1248	2014
Protein synthesis by pure translation systems Y Shimizu, T Kanamori, T Ueda Methods 36 (3), 299-304, 2005	461	2005
Chemical landscape for tissue clearing based on hydrophilic reagents K Tainaka, TC Murakami, EA Susaki, C Shimizu, R Saito, K Takahashi, ... Cell reports 24 (8), 2196-2210. e9, 2018	270	2018
A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing TC Murakami, T Mano, S Saikawa, SA Horiguchi, D Shigeta, K Baba, ... Nature neuroscience 21 (4), 625-637, 2018	255	2018
Efficient protein selection based on ribosome display system with purified components H Ohashi, Y Shimizu, BW Ying, T Ueda Biochemical and biophysical research communications 352 (1), 270-276, 2007	211	2007
Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues EA Susaki, C Shimizu, A Kuno, K Tainaka, X Li, K Nishi, K Morishima, ... Nature communications 11 (1), 1982, 2020	161	2020
Process for producing peptides by using in vitro transcription/translation system A Inoue, Y Shimizu, T Ueda US Patent 7,118,883, 2006	147	2006
Cell‐free translation systems for protein engineering Y Shimizu, Y Kuruma, BW Ying, S Umekage, T Ueda The FEBS journal 273 (18), 4133-4140, 2006	138	2006
Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria T Udagawa, Y Shimizu, T Ueda Journal of Biological Chemistry 279 (10), 8539-8546, 2004	132	2004
Elongation factor Tu mutants expand amino acid tolerance of protein biosynthesis system Y Doi, T Ohtsuki, Y Shimizu, T Ueda, M Sisido Journal of the American Chemical Society 129 (46), 14458-14462, 2007	131	2007
PURE technology Y Shimizu, T Ueda Cell-free protein production: methods and protocols, 11-21, 2010	121	2010
Mammalian reverse genetics without crossing reveals Nr3a as a short-sleeper gene GA Sunagawa, K Sumiyama, M Ukai-Tadenuma, D Perrin, H Fujishima, ... Cell reports 14 (3), 662-677, 2016	114	2016
Live single cell mass spectrometry reveals cancer‐specific metabolic profiles of circulating tumor cells Y Abouleila, K Onidani, A Ali, H Shoji, T Kawai, CT Lim, V Kumar, S Okaya, ... Cancer science 110 (2), 697-706, 2019	108	2019
Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase K Watanabe, Y Toh, K Suto, Y Shimizu, N Oka, T Wada, K Tomita Nature 449 (7164), 867-871, 2007	97	2007
Development of a minimal cell‐free translation system for the synthesis of presecretory and integral membrane proteins Y Kuruma, K Nishiyama, Y Shimizu, M Müller, T Ueda Biotechnology progress 21 (4), 1243-1251, 2005	91	2005
ArfA recruits RF2 into stalled ribosomes Y Shimizu Journal of molecular biology 423 (4), 624-631, 2012	87	2012
Single-cell metabolomics by mass spectrometry: advances, challenges, and future applications A Ali, Y Abouleila, Y Shimizu, E Hiyama, S Emara, A Mashaghi, ... TrAC Trends in Analytical Chemistry 120, 115436, 2019	85	2019
Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins R Narumi, Y Shimizu, M Ukai-Tadenuma, KL Ode, GN Kanda, ... Proceedings of the National Academy of Sciences 113 (24), E3461-E3467, 2016	81	2016
The role of SmpB protein in trans-translation Y Shimizu, T Ueda FEBS letters 514 (1), 74-77, 2002	78	2002

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