|Transcriptome assembly from long-read RNA-seq alignments with StringTie2|
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome Biology 20 (1), 1-13, 2019
|Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED|
S Kovaka, Y Fan, B Ni, W Timp, MC Schatz
Nature Biotechnology 39 (4), 431-441, 2021
|Novel circular RNA circNF1 acts as a molecular sponge, promoting gastric cancer by absorbing miR-16|
Z Wang, K Ma, S Pitts, Y Cheng, X Liu, X Ke, S Kovaka, H Ashktorab, ...
Endocrine-related cancer 26 (3), 265-277, 2019
|Genomics and development of Lentinus tigrinus, a white-rot wood-decaying mushroom with dimorphic fruiting bodies|
B Wu, Z Xu, A Knudson, A Carlson, N Chen, S Kovaka, K LaButti, ...
Genome biology and evolution, 2018
|Tracking the History of Knowledge Using Historical Editions of Encyclopedia Britannica|
M Gronas, A Rumshisky, A Gabrovski, S Kovaka, H Chen
Adaptation of Language Resources and Tools for Processing Cultural Heritage …, 2012
|Pan-genomic Matching Statistics for Targeted Nanopore Sequencing|
O Ahmed, M Rossi, S Kovaka, MC Schatz, T Gagie, C Boucher, ...
iScience, 102696, 2021
|High resolution copy number inference in cancer using short-molecule nanopore sequencing|
T Baslan, S Kovaka, FJ Sedlazeck, Y Zhang, R Wappel, SJ Lowe, ...
|Coffea arabica variety Caturra and C. eugenioides Genome Assembly and Annotation|
A Zimin, M Yepes, CE Maldonado, L Navarro, S Kovaka, M Pertea, ...
Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019