|Global landscape of protein complexes in the yeast Saccharomyces cerevisiae|
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637-643, 2006
|Sequence-specific error profile of Illumina sequencers|
K Nakamura, T Oshima, T Morimoto, S Ikeda, H Yoshikawa, Y Shiwa, ...
Nucleic acids research 39 (13), e90-e90, 2011
|Development and implementation of an algorithm for detection of protein complexes in large interaction networks|
M Altaf-Ul-Amin, Y Shinbo, K Mihara, K Kurokawa, S Kanaya
BMC bioinformatics 7 (1), 207, 2006
|Large-scale identification of protein–protein interaction of Escherichia coli K-12|
Genome Research 16 (5), 686-691, 2006
|KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research|
FM Afendi, T Okada, M Yamazaki, A Hirai-Morita, Y Nakamura, ...
Plant and Cell Physiology 53 (2), e1-e1, 2012
|KNApSAcK: a comprehensive species-metabolite relationship database|
Y Shinbo, Y Nakamura, M Altaf-Ul-Amin, H Asahi, K Kurokawa, M Arita, ...
Plant metabolomics, 165-181, 2006
|Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data|
T Okada, F Mochamad Afendi, M Altaf-Ul-Amin, H Takahashi, ...
Current computer-aided drug design 6 (3), 179-196, 2010
|KNApSAcK metabolite activity database for retrieving the relationships between metabolites and biological activities|
Y Nakamura, F Mochamad Afendi, A Kawsar Parvin, N Ono, K Tanaka, ...
Plant and Cell Physiology 55 (1), e7-e7, 2014
|Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry|
H Takahashi, K Kai, Y Shinbo, K Tanaka, D Ohta, T Oshima, ...
Analytical and Bioanalytical Chemistry 391 (8), 2769, 2008
|Systems biology in the context of big data and networks|
M Altaf-Ul-Amin, FM Afendi, SK Kiboi, S Kanaya
BioMed research international 2014, 2014
|PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein …|
S Kikugawa, K Nishikata, K Murakami, Y Sato, M Suzuki, M Altaf-Ul-Amin, ...
BMC systems biology 6 (S2), S7, 2012
|Data mining methods for omics and knowledge of crude medicinal plants toward big data biology|
FM Afendi, N Ono, Y Nakamura, K Nakamura, LK Darusman, N Kibinge, ...
Computational and Structural Biotechnology Journal 4 (5), e201301010, 2013
|KNApSAcK-3D: a three-dimensional structure database of plant metabolites|
K Nakamura, N Shimura, Y Otabe, A Hirai-Morita, Y Nakamura, N Ono, ...
Plant and Cell Physiology 54 (2), e4-e4, 2013
|Dynamics of Time-Lagged Gene-to-Metabolite Networks of Escherichia coli Elucidated by Integrative Omics Approach|
H Takahashi, R Morioka, R Ito, T Oshima, M Altaf-Ul-Amin, N Ogasawara, ...
Omics: a journal of integrative biology 15 (1-2), 15-23, 2011
|Novel approach to classify plants based on metabolite-content similarity|
K Liu, AA Abdullah, M Huang, T Nishioka, M Altaf-Ul-Amin, S Kanaya
BioMed research international 2017, 2017
|Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes|
M Wada, H Takahashi, M Altaf-Ul-Amin, K Nakamura, MY Hirai, D Ohta, ...
Gene 503 (1), 56-64, 2012
|Development and mining of a volatile organic compound database|
AA Abdullah, M Altaf-Ul-Amin, N Ono, T Sato, T Sugiura, AH Morita, ...
BioMed research international 2015, 2015
|Clustering of 3D‐Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities|
Y Ohtana, AA Abdullah, M Altaf‐Ul‐Amin, M Huang, N Ono, T Sato, ...
Molecular Informatics 33 (11‐12), 790-801, 2014
|The entire organization of transcription units on the Bacillus subtilis genome|
H Kobayashi, J Akitomi, N Fujii, K Kobayashi, M Altaf-Ul-Amin, ...
BMC genomics 8 (1), 1-11, 2007
|DPClus: a density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks|
M Altaf-Ul-Amin, H Tsuji, K Kurokawa, H Asahi, Y Shinbo, S Kanaya
Journal of Computer Aided Chemistry 7, 150-156, 2006