| Benchmarking AlphaFold for protein complex modeling reveals accuracy determinants R Yin, BY Feng, A Varshney, BG Pierce Protein Science 31 (8), e4379, 2022 | 158 | 2022 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 81 | 2021 |
| CoV3D: a database of high resolution coronavirus protein structures R Gowthaman, JD Guest, R Yin, J Adolf-Bryfogle, WR Schief, BG Pierce Nucleic acids research 49 (D1), D282-D287, 2021 | 67 | 2021 |
| Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors D Wu, A Kolesnikov, R Yin, JD Guest, R Gowthaman, A Shmelev, ... Nature Communications 13 (1), 19, 2022 | 27 | 2022 |
| Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants R Yin, JD Guest, G Taherzadeh, R Gowthaman, I Mittra, J Quackenbush, ... PLoS Computational Biology 17 (9), e1009380, 2021 | 17* | 2021 |
| Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 15 | 2023 |
| TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning R Yin, HV Ribeiro-Filho, V Lin, R Gowthaman, M Cheung, BG Pierce Nucleic Acids Research 51 (W1), W569-W576, 2023 | 15 | 2023 |
| Evaluation of AlphaFold antibody–antigen modeling with implications for improving predictive accuracy R Yin, BG Pierce Protein Science 33 (1), e4865, 2024 | 14 | 2024 |
| SUMO targeting of a stress-tolerant Ulp1 SUMO protease J Peek, C Harvey, D Gray, D Rosenberg, L Kolla, R Levy-Myers, R Yin, ... Plos one 13 (1), e0191391, 2018 | 13 | 2018 |
| Structural features of antibody-peptide recognition JH Lee, R Yin, G Ofek, BG Pierce Frontiers in Immunology 13, 910367, 2022 | 8 | 2022 |
| Localization of sumo-modified proteins using fluorescent sumo-trapping proteins R Yin, C Harvey, DC Shakes, O Kerscher JoVE (Journal of Visualized Experiments), e59576, 2019 | 6 | 2019 |
| Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies MC Metcalf, BM Janus, R Yin, R Wang, JD Guest, E Pozharski, M Law, ... Nature Communications 14 (1), 3980, 2023 | 5 | 2023 |
| Detection of rapidly accumulating stress‐induced SUMO in prostate cancer cells by a fluorescent SUMO biosensor R Yin, J Song, A Esquela‐Kerscher, O Kerscher Molecular Carcinogenesis 60 (12), 886-897, 2021 | 2 | 2021 |
| SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors C Choy, J Chen, J Li, DT Gallagher, J Lu, D Wu, A Zou, H Hemani, ... Nature Communications 14 (1), 6725, 2023 | | 2023 |
| Protein Modification Employing Non-Canonical Amino Acids to Prepare SUMOylation Detecting Bioconjugates AC Williard, HJ Switzer, CA Howard, R Yin, BL Russell, R Sanyal, S Yu, ... Pharmaceutics 14 (12), 2826, 2022 | | 2022 |
| Methods and compositions for visualizing sumo O Kerscher, R Yin US Patent App. 17/712,706, 2022 | | 2022 |
| Structural and energetic profiling of SARS-CoV-2 antibody recognition and the impact of circulating variants (preprint) R Yin, J Guest, G Taherzadeh, R Gowthaman, I Mittra, J Quackenbush, ... | | 2021 |
| A Database of Coronavirus Protein Structures Enables Insights into SARS-CoV-2 Antibody Recognition and Escape R Yin, J Guest, G Taherzadeh, R Gowthaman, I Mittra, J Quackenbush, ... Protein Science, 73-73, 2021 | | 2021 |
| The SUMO-Stress Response (SSR) in Normal and Cancerous Cells R Yin | | 2019 |
Brian G. PierceAssociate Professor, Department of Cell Biology and Molecular Genetics, IBBR, University of Maryland確認したメール アドレス: umd.edu
