| A molecular portrait of de novo genes in yeasts N Vakirlis, AS Hebert, DA Opulente, G Achaz, CT Hittinger, G Fischer, ... Molecular biology and evolution, msx315, 2017 | 128 | 2017 |
| Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes N Vakirlis, AR Carvunis, A McLysaght elife 9, e53500, 2020 | 124 | 2020 |
| De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences N Vakirlis, O Acar, B Hsu, N Castilho Coelho, SB Van Oss, A Wacholder, ... Nature communications 11 (1), 781, 2020 | 113* | 2020 |
| Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus N Vakirlis, V Sarilar, G Drillon, A Fleiss, N Agier, JP Meyniel, L Blanpain, ... Genome research 26 (7), 918-932, 2016 | 87 | 2016 |
| De novo birth of functional microproteins in the human lineage N Vakirlis, Z Vance, KM Duggan, A McLysaght Cell reports 41 (12), 2022 | 60 | 2022 |
| Computational prediction of de novo emerged protein-coding genes N Vakirlis, A McLysaght Computational methods in protein evolution, 63-81, 2019 | 27* | 2019 |
| Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast É Caudal, V Loegler, F Dutreux, N Vakirlis, É Teyssonničre, C Caradec, ... Nature Genetics, 1-10, 2024 | 14 | 2024 |
| Interlaboratory comparison study on ribodepleted total RNA high-throughput sequencing for plant virus diagnostics and bioinformatic competence YZA Gaafar, M Westenberg, M Botermans, K László, K De Jonghe, ... Pathogens 10 (9), 1174, 2021 | 14 | 2021 |
| Intergenic regions of Saccharomycotina yeasts are enriched in potential to encode transmembrane domains E Tassios, C Nikolaou, N Vakirlis Molecular Biology and Evolution 40 (3), msad059, 2023 | 6 | 2023 |
| Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon FO Gehlert, L Nickel, N Vakirlis, K Hammerschmidt, HI Vargas Gebauer, ... Nucleic acids research 51 (13), 6927-6943, 2023 | 5 | 2023 |
| The plasma membrane Cation binding protein 1 affects accumulation of Potato virus Y in pepper both at the systemic level and in protoplasts D Beris, K Kotsaridis, N Vakirlis, A Termentzi, I Theologidis, B Moury, ... Virus research 280, 197899, 2020 | 4 | 2020 |
| Evolution of gene repertoires and new genes in yeasts N Vakirlis Paris 6, 2016 | 4 | 2016 |
| Evolutionary journey and characterisation of a novel pan‐gene associated with beer strains of Saccharomyces cerevisiae N Vakirlis, C Monerawela, G McManus, O Ribeiro, A McLysaght, T James, ... Yeast 36 (7), 425-437, 2019 | 2 | 2019 |
| Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins N Vakirlis, A Kupczok Genome Research 34 (6), 888-903, 2024 | 1 | 2024 |
| Degradation determinants are abundant in human noncanonical proteins C Casola, A Owoyemi, N Vakirlis bioRxiv, 2024.05. 01.592071, 2024 | 1 | 2024 |
| Distinct chromosomal “niches” in the genome of Saccharomyces cerevisiae provide the background for genomic innovation and shape the fate of gene duplicates A Stavropoulou, E Tassios, M Kalyva, M Georgoulopoulos, N Vakirlis, ... NAR Genomics and Bioinformatics 4 (4), lqac086, 2022 | 1 | 2022 |
| Ancestral Sequence Reconstruction as a tool to detect and study de novo gene emergence N Vakirlis, O Acar, V Cherupally, AR Carvunis Genome Biology and Evolution 16 (8), evae151, 2024 | | 2024 |
Aoife McLysaghtChair of Evolutionary Genetics, Trinity College DublinVerified email at tcd.ie
