| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 239 | 2020 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 90 | 2021 |
| 3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis Y Tokuoka, TG Yamada, D Mashiko, Z Ikeda, NF Hiroi, TJ Kobayashi, ... NPJ systems biology and applications 6 (1), 32, 2020 | 44 | 2020 |
| Predicting the future direction of cell movement with convolutional neural networks S Nishimoto, Y Tokuoka, TG Yamada, NF Hiroi, A Funahashi PloS one 14 (9), e0221245, 2019 | 25 | 2019 |
| Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery TG Yamada, Y Suetsugu, R Deviatiiarov, O Gusev, R Cornette, ... Scientific reports 8 (1), 17941, 2018 | 16 | 2018 |
| Titanium culture vessel presenting temperature gradation for the thermotolerance estimation of cells C Imashiro, Y Jin, M Hayama, TG Yamada, A Funahashi, K Sakaguchi, ... Cyborg and Bionic Systems 4, 0049, 2023 | 12 | 2023 |
| Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11 TG Yamada, Y Hiki, NF Hiroi, E Shagimardanova, O Gusev, R Cornette, ... PLoS One 15 (3), e0230218, 2020 | 12 | 2020 |
| Activation of cell migration via morphological changes in focal adhesions depends on shear stress in MYCN-amplified neuroblastoma cells T Hiraiwa, TG Yamada, N Miki, A Funahashi, N Hiroi Journal of the Royal Society Interface 16 (152), 20180934, 2019 | 11 | 2019 |
| High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance Y Yoshida, N Shaikhutdinov, O Kozlova, M Itoh, M Tagami, M Murata, ... NAR Genomics and Bioinformatics 4 (2), lqac029, 2022 | 9 | 2022 |
| Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells Y Miyata, H Fuse, S Tokumoto, Y Hiki, R Deviatiiarov, Y Yoshida, ... Scientific reports 11 (1), 19698, 2021 | 8 | 2021 |
| Genome-wide role of HSF1 in transcriptional regulation of desiccation tolerance in the anhydrobiotic cell line, Pv11 S Tokumoto, Y Miyata, R Deviatiiarov, TG Yamada, Y Hiki, O Kozlova, ... International journal of molecular sciences 22 (11), 5798, 2021 | 8 | 2021 |
| Direct cell counting using macro-scale smartphone images of cell aggregates C Imashiro, Y Tokuoka, K Kikuhara, TG Yamada, K Takemura, ... IEEE Access 8, 170033-170043, 2020 | 7 | 2020 |
| An explainable deep learning-based algorithm with an attention mechanism for predicting the live birth potential of mouse embryos Y Tokuoka, TG Yamada, D Mashiko, Z Ikeda, TJ Kobayashi, K Yamagata, ... Artificial Intelligence in Medicine 134, 102432, 2022 | 6 | 2022 |
| Intercellular interaction mechanisms promote diversity in intracellular ATP concentration in Escherichia coli populations RJ Nakatani, M Itabashi, TG Yamada, NF Hiroi, A Funahashi Scientific reports 12 (1), 17946, 2022 | 5 | 2022 |
| 3d convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis. npj Systems Biology and Applications 6, 1–12 Y Tokuoka, TG Yamada, D Mashiko, Z Ikeda, NF Hiroi, TJ Kobayashi, ... A. doi 10, 2020 | 5 | 2020 |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... Frontiers in Immunology 14, 1282859, 2024 | 4 | 2024 |
| Development of non-bias phenotypic drug screening for cardiomyocyte hypertrophy by image segmentation using deep learning J Komuro, Y Tokuoka, T Seki, D Kusumoto, H Hashimoto, T Katsuki, ... Biochemical and Biophysical Research Communications 632, 181-188, 2022 | 3 | 2022 |
| Temperature elevation detection in migrating cells T Nakamura, J Sakamoto, K Okabe, A Taniguchi, TG Yamada, S Nonaka, ... Optics Continuum 1 (5), 1085-1097, 2022 | 3 | 2022 |
| Symbolic integration by integrating learning models with different strengths and weaknesses H Kubota, Y Tokuoka, TG Yamada, A Funahashi IEEE Access 10, 47000-47010, 2022 | 3 | 2022 |
| Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network T Iwasaki, R Takiguchi, T Hiraiwa, TG Yamada, K Yamazaki, NF Hiroi, ... Processes 8 (2), 166, 2020 | 3 | 2020 |
Akira FunahashiProfessor of Systems Biology, Keio University確認したメール アドレス: bio.keio.ac.jp
