| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 86 | 2020 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 21 | 2021 |
| 3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis Y Tokuoka, TG Yamada, D Mashiko, Z Ikeda, NF Hiroi, TJ Kobayashi, ... NPJ systems biology and applications 6 (1), 1-12, 2020 | 19 | 2020 |
| Predicting the future direction of cell movement with convolutional neural networks S Nishimoto, Y Tokuoka, TG Yamada, NF Hiroi, A Funahashi PloS one 14 (9), e0221245, 2019 | 12 | 2019 |
| Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery TG Yamada, Y Suetsugu, R Deviatiiarov, O Gusev, R Cornette, ... Scientific reports 8 (1), 1-11, 2018 | 9 | 2018 |
| Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11 TG Yamada, Y Hiki, NF Hiroi, E Shagimardanova, O Gusev, R Cornette, ... PloS one 15 (3), e0230218, 2020 | 6 | 2020 |
| Activation of cell migration via morphological changes in focal adhesions depends on shear stress in MYCN-amplified neuroblastoma cells T Hiraiwa, TG Yamada, N Miki, A Funahashi, N Hiroi Journal of the Royal Society Interface 16 (152), 20180934, 2019 | 5 | 2019 |
| Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells Y Miyata, H Fuse, S Tokumoto, Y Hiki, R Deviatiiarov, Y Yoshida, ... Scientific reports 11 (1), 1-14, 2021 | 4 | 2021 |
| Genome-wide role of hsf1 in transcriptional regulation of desiccation tolerance in the anhydrobiotic cell line, pv11 S Tokumoto, Y Miyata, R Deviatiiarov, TG Yamada, Y Hiki, O Kozlova, ... International journal of molecular sciences 22 (11), 5798, 2021 | 3 | 2021 |
| Direct cell counting using macro-scale smartphone images of cell aggregates C Imashiro, Y Tokuoka, K Kikuhara, TG Yamada, K Takemura, ... IEEE Access 8, 170033-170043, 2020 | 2 | 2020 |
| Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network T Iwasaki, R Takiguchi, T Hiraiwa, TG Yamada, K Yamazaki, NF Hiroi, ... Processes 8 (2), 166, 2020 | 2 | 2020 |
| Xitosbml: A modeling tool for creating spatial systems biology markup language models from microscopic images K Ii, K Mashimo, M Ozeki, TG Yamada, N Hiroi, A Funahashi Frontiers in genetics, 1027, 2019 | 2 | 2019 |
| Deep learning for non-invasive determination of the differentiation status of human neuronal cells by using phase-contrast photomicrographs M Ooka, Y Tokuoka, S Nishimoto, NF Hiroi, TG Yamada, A Funahashi Applied Sciences 9 (24), 5503, 2019 | 1 | 2019 |
| High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance Y Yoshida, N Shaikhutdinov, O Kozlova, M Itoh, M Tagami, M Murata, ... NAR genomics and bioinformatics 4 (2), lqac029, 2022 | | 2022 |
| Temperature elevation detection in migrating cells T Nakamura, J Sakamoto, K Okabe, A Taniguchi, TG Yamada, S Nonaka, ... Optics Continuum 1 (5), 1085-1097, 2022 | | 2022 |
| Symbolic integration by integrating learning models with different strengths and weaknesses H Kubota, Y Tokuoka, TG Yamada, A Funahashi IEEE Access, 2022 | | 2022 |
| SBMLWebApp: Web-Based Simulation, Steady-State Analysis, and Parameter Estimation of Systems Biology Models TG Yamada, K Ii, M König, M Feierabend, A Dräger, A Funahashi Processes 9 (10), 1830, 2021 | | 2021 |
| Quantitative analysis of sensitivity to a Wnt3a gradient in determination of the pole‐to‐pole axis of mitotic cells by using a microfluidic device T Hiraiwa, Y Nakai, TG Yamada, R Tanimoto, H Kimura, Y Matsumoto, ... FEBS open bio 8 (12), 1920-1935, 2018 | | 2018 |
Akira FunahashiProfessor of Systems Biology, Keio University確認したメール アドレス: bio.keio.ac.jp
