The FANTOM Consortium

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	All	Since 2019
Citations	36736	14151
h-index	84	50
i10-index	175	131

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Co-authors

Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Alistair ForrestSystems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWAVerified email at perkins.uwa.edu.au
Hideya KawajiTokyo Metropolitan Institute of Medical ScienceVerified email at igakuken.or.jp
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Erik ArnerGSKVerified email at gsk.com
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
Michiel de HoonTeam Leader, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Jessica SeverinRIKENVerified email at gsc.riken.jp
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
Stefano GustincichDeputy Director Life Tech Istituto Italiano di TecnologiaVerified email at iit.it
Yasushi OkazakiIntractable Disease Research Center, Juntendo UniversityVerified email at juntendo.ac.jp
Robin AnderssonUniversity of CopenhagenVerified email at bio.ku.dk
Hidemasa BonoGraduate School of Integrated Sciences for Life, Hiroshima UniversityVerified email at hiroshima-u.ac.jp
Nicolas BertinGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Jayson HarshbargerTechnical Scientist at RIKEN Center for Life Science TechnologiesVerified email at gsc.riken.jp

The FANTOM Consortium

RIKEN

Verified email at gsc.riken.jp - Homepage

Transcriptome Genome Systems Biology CAGE RNA-seq


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The transcriptional landscape of the mammalian genome J Gough, MC Frith, T Ravasi, C Wells, ARR Forrest, MJ Davis, ... Science 309 (5740), 1559-1563, 2005	4070*	2005
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	4067	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	2608	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	2070	2002
Antisense transcription in the mammalian transcriptome S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, ... Science 309 (5740), 1564-1566, 2005	2046	2005
A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014	1693	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1596	2006
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ... Nature 491 (7424), 454-457, 2012	1065	2012
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199, 2017	999	2017
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009	889	2009
Functional annotation of a full-length mouse cDNA collection J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, ... Nature 409 (6821), 685-690, 2001	882	2001
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 22, 2015	837	2015
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	831	2010
A draft network of ligand–receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ... Nature communications 6 (1), 1-12, 2015	730	2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	598	2015
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872, 2017	547	2017
Tiny RNAs associated with transcription start sites in animals RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ... Nature genetics 41 (5), 572-578, 2009	434	2009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553-562, 2009	411	2009
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular systems biology 11 (12), 852, 2015	363	2015
Complex loci in human and mouse genomes PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, ... PLoS Genet 2 (4), e47, 2006	349	2006

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