BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 2890 | 2019 |
StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates HA Ogilvie, RR Bouckaert, AJ Drummond Molecular biology and evolution 34 (8), 2101-2114, 2017 | 444 | 2017 |
The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula N Imin, NA Mohd-Radzman, HA Ogilvie, MA Djordjevic Journal of Experimental Botany 64 (17), 5395-5409, 2013 | 210 | 2013 |
Bayesian inference of species networks from multilocus sequence data C Zhang, HA Ogilvie, AJ Drummond, T Stadler Molecular biology and evolution 35 (2), 504-517, 2018 | 178 | 2018 |
Computational performance and statistical accuracy of* BEAST and comparisons with other methods HA Ogilvie, J Heled, D Xie, AJ Drummond Systematic biology 65 (3), 381-396, 2016 | 119 | 2016 |
Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides E Thynne, IML Saur, J Simbaqueba, HA Ogilvie, Y Gonzalez‐Cendales, ... Molecular plant pathology 18 (6), 811-824, 2017 | 100 | 2017 |
Advances in computational methods for phylogenetic networks in the presence of hybridization RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh Bioinformatics and phylogenetics: seminal contributions of Bernard Moret …, 2019 | 87 | 2019 |
Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes HA Ogilvie, N Imin, MA Djordjevic BMC genomics 15, 1-15, 2014 | 78 | 2014 |
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... Genome research 31 (4), 635-644, 2021 | 54* | 2021 |
CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth K Chapman, M Taleski, HA Ogilvie, N Imin, MA Djordjevic Journal of Experimental Botany 70 (15), 3955-3967, 2019 | 50 | 2019 |
microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula RP Eyles, PH Williams, SJ Ohms, GF Weiller, HA Ogilvie, MA Djordjevic, ... Planta 238, 91-105, 2013 | 37 | 2013 |
Practical aspects of phylogenetic network analysis using PhyloNet Z Cao, X Liu, HA Ogilvie, Z Yan, L Nakhleh BioRxiv, 746362, 2019 | 30 | 2019 |
A divide-and-conquer method for scalable phylogenetic network inference from multilocus data J Zhu, X Liu, HA Ogilvie, LK Nakhleh Bioinformatics 35 (14), i370-i378, 2019 | 21 | 2019 |
Inferring species trees using integrative models of species evolution HA Ogilvie, TG Vaughan, NJ Matzke, GJ Slater, T Stadler, D Welch, ... bioRxiv, 242875, 2018 | 19* | 2018 |
Joint inference of species histories and gene flow NF Müller, HA Ogilvie, C Zhang, MC Fontaine, JE Amaya-Romero, ... bioRxiv, 348391, 2021 | 17 | 2021 |
Maximum parsimony inference of phylogenetic networks in the presence of polyploid complexes Z Yan, Z Cao, Y Liu, HA Ogilvie, L Nakhleh Systematic Biology 71 (3), 706-720, 2022 | 14 | 2022 |
Unifying gene duplication, loss, and coalescence on phylogenetic networks P Du, HA Ogilvie, L Nakhleh International Symposium on Bioinformatics Research and Applications, 40-51, 2019 | 14 | 2019 |
Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology ACA Silva, N Santos, HA Ogilvie, C Moritz PeerJ 5, e3724, 2017 | 14 | 2017 |
Phylogenomic assessment of the role of hybridization and introgression in trait evolution Y Wang, Z Cao, HA Ogilvie, L Nakhleh PLoS genetics 17 (8), e1009701, 2021 | 10 | 2021 |
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ... Bioinformatics 38 (Supplement_1), i195-i202, 2022 | 6 | 2022 |